Variant report
| Variant | rs6097991 |
|---|---|
| Chromosome Location | chr20:53068504-53068505 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:10)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:10 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:53067721..53069339-chr20:53072421..53074110,2 | MCF-7 | breast: | |
| 2 | chr20:53067710..53071026-chr20:53071242..53075338,6 | MCF-7 | breast: | |
| 3 | chr17:57914261..57916683-chr20:53066420..53069406,2 | MCF-7 | breast: | |
| 4 | chr20:53066844..53069030-chr20:53089773..53091908,2 | MCF-7 | breast: | |
| 5 | chr20:53067433..53069648-chr20:53093856..53096720,2 | MCF-7 | breast: | |
| 6 | chr20:53066739..53069116-chr20:53078549..53080137,4 | MCF-7 | breast: | |
| 7 | chr20:52823521..52825358-chr20:53067389..53069407,2 | MCF-7 | breast: | |
| 8 | chr20:53061996..53063880-chr20:53065895..53070016,4 | MCF-7 | breast: | |
| 9 | chr20:52972070..52973740-chr20:53068200..53071039,2 | MCF-7 | breast: | |
| 10 | chr20:53068334..53071090-chr20:53089202..53090759,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000101132 | Chromatin interaction |
| ENSG00000062716 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1477739 | 1.00[EUR][1000 genomes] |
| rs16999399 | 1.00[EUR][1000 genomes] |
| rs16999732 | 1.00[EUR][1000 genomes] |
| rs2219732 | 1.00[EUR][1000 genomes] |
| rs2426520 | 1.00[EUR][1000 genomes] |
| rs2426521 | 1.00[EUR][1000 genomes] |
| rs2616329 | 1.00[EUR][1000 genomes] |
| rs2616331 | 1.00[EUR][1000 genomes] |
| rs2616334 | 1.00[EUR][1000 genomes] |
| rs2616337 | 1.00[EUR][1000 genomes] |
| rs2797969 | 1.00[EUR][1000 genomes] |
| rs56977264 | 1.00[EUR][1000 genomes] |
| rs57927391 | 1.00[EUR][1000 genomes] |
| rs6014025 | 1.00[EUR][1000 genomes] |
| rs60215168 | 1.00[EUR][1000 genomes] |
| rs6023260 | 1.00[EUR][1000 genomes] |
| rs6023271 | 1.00[EUR][1000 genomes] |
| rs6091884 | 1.00[EUR][1000 genomes] |
| rs6091909 | 1.00[EUR][1000 genomes] |
| rs6097995 | 1.00[EUR][1000 genomes] |
| rs61495423 | 1.00[EUR][1000 genomes] |
| rs62214388 | 1.00[EUR][1000 genomes] |
| rs793039 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
| 2 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
| 3 | nsv834012 | chr20:52921007-53097177 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
