Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:53073108..53074852-chr20:53089210..53091091,3	MCF-7	breast:
2	chr20:53068334..53071090-chr20:53089202..53090759,2	MCF-7	breast:
3	chr20:53066844..53069030-chr20:53089773..53091908,2	MCF-7	breast:
4	chr1:144917532..144918295-chr20:53090253..53091159,2	MCF-7	breast:
5	chr20:52823193..52825695-chr20:53088951..53090894,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1477739	1.00[EUR][1000 genomes]
rs16999399	1.00[EUR][1000 genomes]
rs16999732	1.00[EUR][1000 genomes]
rs2219732	1.00[EUR][1000 genomes]
rs2426520	1.00[EUR][1000 genomes]
rs2426521	1.00[EUR][1000 genomes]
rs2616329	1.00[EUR][1000 genomes]
rs2616331	1.00[EUR][1000 genomes]
rs2616334	1.00[EUR][1000 genomes]
rs2616337	1.00[EUR][1000 genomes]
rs2797969	1.00[EUR][1000 genomes]
rs56977264	1.00[EUR][1000 genomes]
rs6014025	1.00[EUR][1000 genomes]
rs60215168	1.00[EUR][1000 genomes]
rs6023260	1.00[EUR][1000 genomes]
rs6023271	1.00[EUR][1000 genomes]
rs6091884	1.00[EUR][1000 genomes]
rs6091909	1.00[EUR][1000 genomes]
rs6097991	1.00[EUR][1000 genomes]
rs6097995	1.00[EUR][1000 genomes]
rs61495423	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62214388	1.00[EUR][1000 genomes]
rs793039	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53084800-53091800	Weak transcription	Aorta	Aorta
2	chr20:53088000-53091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr20:53088000-53091600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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