Variant report

Variant	rs2220134
Chromosome Location	chr6:134312228-134312229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134310647..134312646-chr6:134313055..134315565,2	MCF-7	breast:
2	chr6:134310170..134314826-chr6:134315037..134317110,5	K562	blood:
3	chr6:134305563..134309080-chr6:134310830..134313541,5	MCF-7	breast:
4	chr6:134308615..134311240-chr6:134311947..134314798,2	MCF-7	breast:
5	chr6:134274656..134276857-chr6:134311331..134313340,2	K562	blood:
6	chr6:134310840..134313274-chr6:134336686..134339271,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3777899	0.90[YRI][hapmap]
rs6902440	0.90[YRI][hapmap]
rs73774175	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774187	0.89[AFR][1000 genomes]
rs9493766	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493767	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493768	0.84[YRI][hapmap]
rs9493778	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9493782	0.84[AFR][1000 genomes]
rs9493783	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493784	1.00[AMR][1000 genomes]
rs9493789	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
2	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
4	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
5	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:134299400-134313200	Weak transcription	Psoas Muscle	Psoas
7	chr6:134299400-134313400	Weak transcription	Aorta	Aorta
8	chr6:134299400-134313800	Weak transcription	Right Ventricle	heart
9	chr6:134299800-134313600	Weak transcription	Fetal Heart	heart
10	chr6:134299800-134314000	Weak transcription	Fetal Brain Male	brain
11	chr6:134300400-134315400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:134301000-134312400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:134304800-134312600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:134304800-134313800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:134304800-134314400	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:134304800-134315600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:134305000-134314000	Weak transcription	Brain Angular Gyrus	brain
21	chr6:134305000-134314000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
23	chr6:134306000-134324000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:134306000-134324000	Weak transcription	Brain Anterior Caudate	brain
25	chr6:134306200-134316000	Weak transcription	Fetal Intestine Large	intestine
26	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:134306400-134312400	Weak transcription	Colonic Mucosa	Colon
28	chr6:134306800-134314800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:134307400-134313800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:134307400-134314000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:134307400-134316400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:134307400-134316600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:134307600-134314800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:134307800-134313600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:134307800-134316800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:134307800-134320400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:134308000-134313800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:134308000-134318400	Weak transcription	Primary T cells from cord blood	blood
39	chr6:134308200-134313600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:134308200-134313800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:134308200-134313800	Weak transcription	Left Ventricle	heart
42	chr6:134308400-134312400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:134308400-134313600	Weak transcription	Fetal Lung	lung
44	chr6:134308400-134314000	Weak transcription	Adipose Nuclei	Adipose
45	chr6:134308400-134316200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:134308400-134320400	Weak transcription	Placenta	Placenta
47	chr6:134308600-134313600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:134308600-134315600	Weak transcription	Fetal Brain Female	brain
49	chr6:134308800-134319600	Weak transcription	Liver	Liver
50	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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