Variant report

Variant	rs9493789
Chromosome Location	chr6:134308694-134308695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134304345..134307619-chr6:134307784..134311242,6	K562	blood:
2	chr6:134307763..134310041-chr6:134313958..134317124,3	K562	blood:
3	chr6:134308615..134311240-chr6:134311947..134314798,2	MCF-7	breast:
4	chr6:134292321..134294541-chr6:134307112..134309722,2	K562	blood:
5	chr6:134305563..134309080-chr6:134310830..134313541,5	MCF-7	breast:
6	chr6:134307630..134309585-chr6:134323063..134324734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2220134	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483638	0.86[AFR][1000 genomes]
rs9493766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493778	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493782	0.95[AFR][1000 genomes]
rs9493783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
2	chr6:134280600-134312200	Weak transcription	Lung	lung
3	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
6	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
7	chr6:134295200-134311800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:134299400-134311800	Weak transcription	Gastric	stomach
10	chr6:134299400-134312000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:134299400-134313200	Weak transcription	Psoas Muscle	Psoas
12	chr6:134299400-134313400	Weak transcription	Aorta	Aorta
13	chr6:134299400-134313800	Weak transcription	Right Ventricle	heart
14	chr6:134299600-134310200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:134299800-134312000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:134299800-134313600	Weak transcription	Fetal Heart	heart
17	chr6:134299800-134314000	Weak transcription	Fetal Brain Male	brain
18	chr6:134300400-134312200	Weak transcription	Small Intestine	intestine
19	chr6:134300400-134315400	Weak transcription	Fetal Intestine Small	intestine
20	chr6:134300600-134312000	Weak transcription	NHLF	lung
21	chr6:134301000-134312400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:134302600-134308800	Strong transcription	Liver	Liver
23	chr6:134302600-134309200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:134303000-134309400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:134303200-134312200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:134304400-134312000	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:134304800-134311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:134304800-134311800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:134304800-134311800	Weak transcription	NHEK	skin
31	chr6:134304800-134312600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:134304800-134313800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:134304800-134314400	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:134304800-134315600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:134305000-134308800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:134305000-134309400	Strong transcription	K562	blood
39	chr6:134305000-134309600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:134305000-134309600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:134305000-134310400	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:134305000-134311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:134305000-134311800	Weak transcription	Pancreas	Pancrea
44	chr6:134305000-134314000	Weak transcription	Brain Angular Gyrus	brain
45	chr6:134305000-134314000	Weak transcription	Brain Substantia Nigra	brain
46	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
47	chr6:134305200-134310800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:134305200-134311800	Weak transcription	A549	lung
49	chr6:134305200-134312200	Weak transcription	Hela-S3	cervix
50	chr6:134305600-134310400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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