Variant report

Variant	rs73774175
Chromosome Location	chr6:134298969-134298970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:134285949-134300753	K562	blood:	n/a	n/a
2	POLR2A	chr6:134298886-134299022	ProgFib	skin:	n/a	n/a
3	POLR2A	chr6:134298450-134299983	K562	blood:	n/a	n/a
4	POLR2A	chr6:134298595-134300045	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:134272489..134275432-chr6:134297855..134300615,3	K562	blood:
2	chr6:134298950..134300635-chr6:134394492..134396372,2	K562	blood:
3	chr6:134297385..134300125-chr6:134336885..134339379,2	MCF-7	breast:

Variant related genes	Relation type
TBPL1	TF binding region
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2220134	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483638	0.88[AFR][1000 genomes]
rs9493766	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493778	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493782	0.98[AFR][1000 genomes]
rs9493783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276200-134299000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
3	chr6:134276600-134302800	Weak transcription	Fetal Kidney	kidney
4	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
5	chr6:134278000-134303600	Weak transcription	Dnd41	blood
6	chr6:134280400-134304200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:134280600-134312200	Weak transcription	Lung	lung
8	chr6:134282600-134302000	Weak transcription	Placenta	Placenta
9	chr6:134283200-134305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:134286800-134299000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:134286800-134304200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:134288400-134306600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:134288800-134299000	Weak transcription	Brain Angular Gyrus	brain
16	chr6:134289400-134299400	Weak transcription	HUVEC	blood vessel
17	chr6:134289600-134299000	Weak transcription	HMEC	breast
18	chr6:134289800-134304200	Weak transcription	Fetal Stomach	stomach
19	chr6:134290000-134299200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:134290000-134304200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:134290200-134302400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
23	chr6:134291000-134299000	Weak transcription	Aorta	Aorta
24	chr6:134291200-134302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:134291600-134299200	Weak transcription	NHLF	lung
26	chr6:134291800-134304000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:134292400-134300600	Weak transcription	Primary B cells from cord blood	blood
28	chr6:134292600-134303000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:134292600-134304400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:134293800-134299000	Weak transcription	HSMM	muscle
31	chr6:134293800-134299200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:134293800-134299800	Weak transcription	Fetal Lung	lung
33	chr6:134294000-134299000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:134294400-134299200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:134294400-134304200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:134294600-134299000	Weak transcription	A549	lung
37	chr6:134294600-134299200	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:134294600-134299200	Weak transcription	NH-A	brain
39	chr6:134294600-134299400	Weak transcription	Fetal Brain Female	brain
40	chr6:134294600-134302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:134294600-134302400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:134294600-134303600	Weak transcription	Primary T cells from cord blood	blood
43	chr6:134294600-134304200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:134294800-134302400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:134295000-134299000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:134295000-134299000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:134295000-134299000	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:134295000-134299000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:134295000-134299000	Weak transcription	Osteobl	bone
50	chr6:134295000-134299200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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