Variant report

Variant	rs2224392
Chromosome Location	chr6:5261136-5261137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:5260300-5261943	K562	blood:	n/a	chr6:5261926-5261935 chr6:5261528-5261538 chr6:5261646-5261656
2	POLR2A	chr6:5260212-5262541	GM12891	blood:	n/a	n/a
3	POLR2A	chr6:5260899-5261934	HUVEC	blood vessel:	n/a	n/a
4	TAF1	chr6:5260316-5262128	H1-hESC	embryonic stem cell:	n/a	n/a
5	RCOR1	chr6:5260285-5262012	K562	blood:	n/a	n/a
6	MAX	chr6:5260382-5262148	HCT-116	colon:	n/a	chr6:5261926-5261935 chr6:5261528-5261538 chr6:5261646-5261656
7	MAX	chr6:5260392-5262027	ECC-1	luminal epithelium:	n/a	chr6:5261926-5261935 chr6:5261528-5261538 chr6:5261646-5261656
8	EGR1	chr6:5260477-5262006	MCF-7	breast:	n/a	chr6:5261783-5261807 chr6:5261237-5261250 chr6:5261920-5261942 chr6:5261237-5261250 chr6:5261237-5261247 chr6:5261930-5261937 chr6:5261927-5261936 chr6:5261777-5261786 chr6:5261237-5261250 chr6:5261234-5261248 chr6:5261236-5261250 chr6:5261156-5261169 chr6:5261238-5261247 chr6:5261237-5261250 chr6:5261191-5261205 chr6:5261285-5261295
9	HCFC1	chr6:5260243-5262113	K562	blood:	n/a	n/a
10	CREB1	chr6:5260293-5262056	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:5260835-5262072	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr6:5260794-5261305	HepG2	liver:	n/a	n/a
13	E2F4	chr6:5261048-5261946	MCF10A-Er-Src	breast:	n/a	chr6:5261161-5261170 chr6:5261286-5261298
14	BRCA1	chr6:5260959-5262008	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr6:5260987-5261193	MCF-7	breast:	n/a	n/a
16	CTCF	chr6:5261090-5261167	Lung_OC	lung:	n/a	n/a
17	CTCF	chr6:5261032-5261693	IMR90	lung:	n/a	chr6:5261238-5261251
18	MXI1	chr6:5260273-5262162	HepG2	liver:	n/a	chr6:5261474-5261489
19	MAX	chr6:5260150-5262141	HepG2	liver:	n/a	chr6:5261926-5261935 chr6:5261528-5261538 chr6:5261646-5261656
20	POLR2A	chr6:5260852-5261994	H1-neurons	neurons:	n/a	n/a
21	CEBPD	chr6:5260848-5261745	HepG2	liver:	n/a	n/a
22	MAX	chr6:5260839-5261987	K562	blood:	n/a	chr6:5261926-5261935 chr6:5261528-5261538 chr6:5261646-5261656
23	HNF4A	chr6:5260886-5261771	HepG2	liver:	n/a	n/a
24	HEY1	chr6:5260857-5261244	K562	blood:	n/a	n/a
25	IRF1	chr6:5260310-5261965	K562	blood:	n/a	chr6:5261504-5261518 chr6:5261194-5261208 chr6:5261221-5261235 chr6:5261232-5261246
26	POLR2A	chr6:5261016-5261460	HepG2	liver:	n/a	n/a
27	SP4	chr6:5260853-5262003	H1-hESC	embryonic stem cell:	n/a	chr6:5261190-5261206 chr6:5261234-5261250 chr6:5261504-5261520
28	ELF1	chr6:5260880-5261259	HepG2	liver:	n/a	n/a
29	POLR2A	chr6:5260843-5261964	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr6:5260122-5262141	SK-N-MC	brain:	n/a	n/a
31	POLR2A	chr6:5260851-5261985	HepG2	liver:	n/a	n/a
32	HMGN3	chr6:5260642-5261970	K562	blood:	n/a	n/a
33	MXI1	chr6:5260305-5262442	Hela-S3	cervix:	n/a	chr6:5261474-5261489
34	JUND	chr6:5260301-5262032	K562	blood:	n/a	n/a
35	YY1	chr6:5260561-5261178	K562	blood:	n/a	chr6:5261087-5261101 chr6:5261162-5261176
36	RFX5	chr6:5260992-5261840	HepG2	liver:	n/a	n/a
37	HCFC1	chr6:5259374-5262547	Hela-S3	cervix:	n/a	n/a
38	EGR1	chr6:5261022-5261367	GM12878	blood:	n/a	chr6:5261237-5261250 chr6:5261237-5261250 chr6:5261237-5261247 chr6:5261237-5261250 chr6:5261234-5261248 chr6:5261236-5261250 chr6:5261156-5261169 chr6:5261238-5261247 chr6:5261237-5261250 chr6:5261191-5261205 chr6:5261285-5261295
39	CBX3	chr6:5260876-5261973	K562	blood:	n/a	n/a
40	MAX	chr6:5260643-5261932	K562	blood:	n/a	chr6:5261528-5261538 chr6:5261646-5261656
41	MXI1	chr6:5259910-5262664	SK-N-SH	brain:	n/a	chr6:5261474-5261489
42	POLR2A	chr6:5259206-5262355	MCF10A-Er-Src	breast:	n/a	n/a
43	ETS1	chr6:5260490-5262001	K562	blood:	n/a	chr6:5261239-5261250
44	MYC	chr6:5260654-5261220	HUVEC	blood vessel:	n/a	n/a
45	ELK1	chr6:5260961-5262097	Hela-S3	cervix:	n/a	n/a
46	EGR1	chr6:5260814-5262138	HCT-116	colon:	n/a	chr6:5261783-5261807 chr6:5261237-5261250 chr6:5261920-5261942 chr6:5261237-5261250 chr6:5261237-5261247 chr6:5261930-5261937 chr6:5261927-5261936 chr6:5261777-5261786 chr6:5261237-5261250 chr6:5261234-5261248 chr6:5261236-5261250 chr6:5261156-5261169 chr6:5261238-5261247 chr6:5261237-5261250 chr6:5261191-5261205 chr6:5261285-5261295
47	UBTF	chr6:5260314-5262005	K562	blood:	n/a	n/a
48	STAT1	chr6:5260943-5262000	GM12878	blood:	n/a	chr6:5261220-5261232
49	POLR2A	chr6:5260978-5261202	A549	lung:	n/a	n/a
50	POLR2A	chr6:5260367-5262627	GM12892	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:5261091-5261141	HCT-116	colon:	n/a
2	chr6:5261091-5261141	PrEC	prostate:	n/a
3	chr6:5261091-5261141	HEEpiC	esophagus:	n/a
4	chr6:5261091-5261141	U87	brain:	n/a
5	chr6:5261091-5261141	HCF	heart:	n/a
6	chr6:5261091-5261141	NH-A	brain:	n/a
7	chr6:5261091-5261141	HCPEpiC	choroid plexus:	n/a
8	chr6:5261091-5261141	HRPEpiC	eye:	n/a
9	chr6:5261091-5261141	ECC-1	luminal epithelium:	n/a
10	chr6:5261091-5261141	ProgFib	skin:	n/a
11	chr6:5261091-5261141	RPTEC	kidney:	n/a
12	chr6:5261091-5261141	GM12892	blood:	n/a
13	chr6:5261091-5261141	SKMC	muscle:	n/a
14	chr6:5261091-5261141	GM12891	blood:	n/a
15	chr6:5261091-5261141	SK-N-SH_RA	brain:	n/a
16	chr6:5261091-5261141	H1-hESC	embryonic stem cell:	embryo
17	chr6:5261091-5261141	PANC-1	pancreas:	n/a
18	chr6:5261091-5261141	Caco-2	colon:	n/a
19	chr6:5261091-5261141	MCF10A-Er-Src	breast:	n/a
20	chr6:5261091-5261141	GM19239	blood:	n/a
21	chr6:5261091-5261141	HUVEC	blood vessel:	n/a
22	chr6:5261091-5261141	SK-N-MC	brain:	n/a
23	chr6:5261091-5261141	MCF-7	breast:	n/a
24	chr6:5261091-5261141	GM12878	blood:	n/a
25	chr6:5261091-5261141	HepG2	liver:	n/a
26	chr6:5261091-5261141	SK-N-SH	brain:	n/a
27	chr6:5261091-5261141	NHDF-neo	bronchial:	n/a
28	chr6:5261091-5261141	A549	lung:	n/a
29	chr6:5261091-5261141	HCM	heart:	n/a
30	chr6:5261091-5261141	HPAEpiC	pulmonary alveolar:	n/a
31	chr6:5261091-5261141	CMK	blood:	n/a
32	chr6:5261091-5261141	HEK293	kidney:	embryo
33	chr6:5261091-5261141	ovcar-3	ovarian:	n/a
34	chr6:5261091-5261141	BJ	skin:	n/a
35	chr6:5261091-5261141	GM06990	blood:	n/a
36	chr6:5261091-5261141	HRE	kidney:	n/a
37	chr6:5261091-5261141	HIPEpiC	eye:	n/a
38	chr6:5261091-5261141	Hepatocyte	liver:	n/a
39	chr6:5261091-5261141	NHBE	bronchial:	n/a
40	chr6:5261091-5261141	AG04449	skin:	fetal
41	chr6:5261091-5261141	IMR90	lung:	fetal
42	chr6:5261091-5261141	HNPCEpiC	eye:	n/a
43	chr6:5261091-5261141	AoSMC	blood vessel:	n/a
44	chr6:5261091-5261141	HMEC	breast:	n/a
45	chr6:5261091-5261141	AG10803	skin:	n/a
46	chr6:5261091-5261141	HAEpiC	amniotic membrane:	n/a
47	chr6:5261091-5261141	SAEC	small airway:	n/a
48	chr6:5261091-5261141	LNCaP	prostate:	n/a
49	chr6:5261091-5261141	HRCEpiC	kidney:	n/a
50	chr6:5261091-5261141	NT2-D1	testis:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:150038831..150039716-chr6:5260490..5261436,2	Hela-S3	cervix:
2	chr1:27020570..27021504-chr6:5260610..5261174,2	Hela-S3	cervix:
3	chr3:195808872..195809382-chr6:5260583..5261415,2	Hela-S3	cervix:

Variant related genes	Relation type
FARS2	TF binding region
LYRM4	TF binding region
FARS2	CpG island
LYRM4	CpG island
ENSG00000136631	Chromatin interaction
ENSG00000260063	Chromatin interaction
ENSG00000072274	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11752747	0.89[EUR][1000 genomes]
rs12174086	0.84[ASN][1000 genomes]
rs13191012	0.94[ASN][1000 genomes]
rs1570085	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609808	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17139985	0.99[ASN][1000 genomes]
rs1884976	0.80[ASN][1000 genomes]
rs2145372	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2224391	1.00[ASN][1000 genomes]
rs2753214	0.80[ASN][1000 genomes]
rs2753222	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2753223	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753224	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753228	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753229	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753230	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753233	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753234	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753235	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2753236	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2753237	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753238	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2753239	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753240	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753243	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753244	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753245	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753246	0.99[ASN][1000 genomes]
rs2753247	0.99[ASN][1000 genomes]
rs2753248	0.99[ASN][1000 genomes]
rs2753249	0.99[ASN][1000 genomes]
rs2773296	0.83[ASN][1000 genomes]
rs2773298	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2773299	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2773300	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2773302	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2773304	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2773306	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2773307	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2773308	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2773309	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2773310	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773311	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773312	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773314	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773316	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773317	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773318	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773319	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2773320	0.99[ASN][1000 genomes]
rs2773322	0.99[ASN][1000 genomes]
rs35048711	0.93[ASN][1000 genomes]
rs36055504	0.94[ASN][1000 genomes]
rs6909619	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913120	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925249	0.99[ASN][1000 genomes]
rs766339	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs766340	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752203	1.00[ASN][1000 genomes]
rs7758400	0.88[ASN][1000 genomes]
rs928170	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328289	0.82[ASN][1000 genomes]
rs9378420	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9378943	0.83[ASN][1000 genomes]
rs9392665	0.92[ASN][1000 genomes]
rs9392666	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9405259	0.81[ASN][1000 genomes]
rs9405260	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9405809	0.90[ASN][1000 genomes]
rs9405811	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9405813	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9504364	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504365	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504368	0.95[ASN][1000 genomes]
rs9504369	0.99[ASN][1000 genomes]
rs9504371	0.99[ASN][1000 genomes]
rs9784870	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1034681	chr6:5070351-5387176	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv538113	chr6:5070351-5387176	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1018152	chr6:5077025-5387176	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv600873	chr6:5089278-5400658	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1030254	chr6:5132261-5431585	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1034463	chr6:5137959-5345678	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1021646	chr6:5157795-5367254	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv538115	chr6:5157795-5367254	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1029609	chr6:5187633-5397254	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1035080	chr6:5206533-5396019	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv538116	chr6:5206533-5396019	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1016456	chr6:5216835-5315913	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv538117	chr6:5216835-5315913	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1019428	chr6:5216835-5627839	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv538118	chr6:5216835-5627839	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv1028185	chr6:5247624-5340163	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5259600-5263000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:5259600-5263200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr6:5259800-5262200	Active TSS	Stomach Smooth Muscle	stomach
4	chr6:5259800-5262800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:5259800-5262800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:5259800-5263200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:5260000-5262800	Active TSS	A549	lung
8	chr6:5260000-5262800	Active TSS	NHDF-Ad	bronchial
9	chr6:5260000-5263000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:5260000-5263000	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:5260000-5263000	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:5260000-5263000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:5260000-5263000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:5260000-5263000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:5260000-5263200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:5260000-5263200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr6:5260000-5263200	Active TSS	K562	blood
18	chr6:5260200-5262400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:5260200-5262400	Active TSS	Fetal Muscle Trunk	muscle
20	chr6:5260200-5262400	Active TSS	Lung	lung
21	chr6:5260200-5262600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr6:5260200-5262600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:5260200-5262600	Active TSS	Esophagus	oesophagus
24	chr6:5260200-5262600	Active TSS	Ovary	ovary
25	chr6:5260200-5262800	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:5260200-5262800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:5260200-5262800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:5260200-5262800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:5260200-5262800	Active TSS	Colonic Mucosa	Colon
30	chr6:5260200-5262800	Active TSS	Fetal Intestine Small	intestine
31	chr6:5260200-5262800	Active TSS	Left Ventricle	heart
32	chr6:5260200-5263000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:5260200-5263200	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr6:5260400-5262400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:5260400-5262400	Active TSS	Aorta	Aorta
36	chr6:5260400-5262400	Active TSS	Brain Hippocampus Middle	brain
37	chr6:5260400-5262400	Active TSS	Gastric	stomach
38	chr6:5260400-5262400	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr6:5260400-5262400	Active TSS	Small Intestine	intestine
40	chr6:5260400-5262400	Active TSS	Spleen	Spleen
41	chr6:5260400-5262400	Bivalent/Poised TSS	HepG2	liver
42	chr6:5260400-5262400	Active TSS	HSMM	muscle
43	chr6:5260400-5262600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:5260400-5262600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:5260400-5262600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:5260400-5262600	Active TSS	Muscle Satellite Cultured Cells	--
47	chr6:5260400-5262600	Active TSS	Colon Smooth Muscle	Colon
48	chr6:5260400-5262600	Active TSS	Fetal Heart	heart
49	chr6:5260400-5262600	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr6:5260400-5262600	Active TSS	Fetal Lung	lung

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