The 2.0 version of rSNPBase

Variant report

Variant rs2753249
Chromosome Location chr6:5263475-5263476
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5262400-5268200 Weak transcription Placenta Amnion Placenta Amnion
2 chr6:5262400-5287200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr6:5262400-5302400 Weak transcription Aorta Aorta
4 chr6:5262600-5263800 Enhancers Fetal Lung lung
5 chr6:5262600-5264600 Enhancers Fetal Brain Female brain
6 chr6:5262600-5266400 Weak transcription Brain Cingulate Gyrus brain
7 chr6:5262600-5268200 Weak transcription Colon Smooth Muscle Colon
8 chr6:5262600-5271200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr6:5262600-5275200 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr6:5262600-5287200 Weak transcription Esophagus oesophagus
11 chr6:5262600-5287600 Weak transcription Ovary ovary
12 chr6:5262800-5263800 Enhancers Fetal Intestine Small intestine
13 chr6:5262800-5266800 Weak transcription Thymus Thymus
14 chr6:5262800-5268800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr6:5262800-5273600 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr6:5262800-5274400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr6:5262800-5277000 Weak transcription Pancreas Pancrea
18 chr6:5262800-5279000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr6:5262800-5287200 Weak transcription Spleen Spleen
20 chr6:5262800-5287400 Weak transcription Fetal Muscle Leg muscle
21 chr6:5263000-5263600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr6:5263000-5263600 Enhancers Primary hematopoietic stem cells blood
23 chr6:5263000-5263800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
24 chr6:5263000-5264800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr6:5263000-5272000 Weak transcription HMEC breast
26 chr6:5263000-5273400 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr6:5263000-5274400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr6:5263000-5277200 Weak transcription Adipose Nuclei Adipose
29 chr6:5263000-5279000 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr6:5263000-5285200 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr6:5263000-5287200 Weak transcription Stomach Smooth Muscle stomach
32 chr6:5263000-5287400 Weak transcription Fetal Stomach stomach
33 chr6:5263000-5287800 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr6:5263000-5301000 Weak transcription Fetal Brain Male brain
35 chr6:5263200-5263600 Enhancers GM12878-XiMat blood
36 chr6:5263200-5263800 Enhancers Primary T helper cells PMA-I stimulated --
37 chr6:5263200-5264600 Enhancers Dnd41 blood
38 chr6:5263200-5266000 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr6:5263200-5266400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr6:5263200-5266400 Weak transcription Liver Liver
41 chr6:5263200-5266600 Weak transcription Fetal Intestine Large intestine
42 chr6:5263200-5270400 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr6:5263200-5271600 Weak transcription NHEK skin
44 chr6:5263200-5271800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr6:5263200-5273800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr6:5263200-5274400 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr6:5263200-5278400 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr6:5263200-5278400 Weak transcription Primary B cells from peripheral blood blood
49 chr6:5263200-5279000 Weak transcription Brain Anterior Caudate brain
50 chr6:5263200-5280200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015