The 2.0 version of rSNPBase

Variant report

Variant rs2773322
Chromosome Location chr6:5263065-5263066
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5259600-5263200 Active TSS iPS-15b Cell Line embryonic stem cell
2 chr6:5259800-5263200 Active TSS HUES48 Cell Line embryonic stem cell
3 chr6:5260000-5263200 Active TSS ES-I3 Cell Line embryonic stem cell
4 chr6:5260000-5263200 Active TSS HUES6 Cell Line embryonic stem cell
5 chr6:5260000-5263200 Active TSS K562 blood
6 chr6:5260200-5263200 Active TSS HUES64 Cell Line embryonic stem cell
7 chr6:5261800-5263200 Flanking Active TSS Primary B cells from cord blood blood
8 chr6:5262000-5263200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr6:5262200-5263200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
10 chr6:5262400-5263200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
11 chr6:5262400-5268200 Weak transcription Placenta Amnion Placenta Amnion
12 chr6:5262400-5287200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr6:5262400-5302400 Weak transcription Aorta Aorta
14 chr6:5262600-5263200 Enhancers Primary B cells from peripheral blood blood
15 chr6:5262600-5263200 Enhancers Primary T helper 17 cells PMA-I stimulated --
16 chr6:5262600-5263200 Enhancers Primary T killer naive cells fromperipheralblood blood
17 chr6:5262600-5263200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr6:5262600-5263200 Enhancers Primary mononuclear cells fromperipheralblood Blood
19 chr6:5262600-5263200 Enhancers Liver Liver
20 chr6:5262600-5263200 Enhancers Brain Anterior Caudate brain
21 chr6:5262600-5263200 Enhancers Rectal Mucosa Donor 31 rectum
22 chr6:5262600-5263200 Flanking Active TSS Dnd41 blood
23 chr6:5262600-5263400 Enhancers Primary T helper naive cells from peripheral blood blood
24 chr6:5262600-5263400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
25 chr6:5262600-5263400 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr6:5262600-5263400 Enhancers Brain Angular Gyrus brain
27 chr6:5262600-5263800 Enhancers Fetal Lung lung
28 chr6:5262600-5264600 Enhancers Fetal Brain Female brain
29 chr6:5262600-5266400 Weak transcription Brain Cingulate Gyrus brain
30 chr6:5262600-5268200 Weak transcription Colon Smooth Muscle Colon
31 chr6:5262600-5271200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr6:5262600-5275200 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr6:5262600-5287200 Weak transcription Esophagus oesophagus
34 chr6:5262600-5287600 Weak transcription Ovary ovary
35 chr6:5262800-5263200 Enhancers Breast Myoepithelial Primary Cells Breast
36 chr6:5262800-5263200 Enhancers Cortex derived primary cultured neurospheres brain
37 chr6:5262800-5263200 Enhancers Fetal Adrenal Gland Adrenal Gland
38 chr6:5262800-5263200 Enhancers Fetal Intestine Large intestine
39 chr6:5262800-5263200 Enhancers NHEK skin
40 chr6:5262800-5263400 Enhancers Muscle Satellite Cultured Cells --
41 chr6:5262800-5263400 Enhancers Skeletal Muscle Male skeletal muscle
42 chr6:5262800-5263400 Enhancers HUVEC blood vessel
43 chr6:5262800-5263800 Enhancers Fetal Intestine Small intestine
44 chr6:5262800-5266800 Weak transcription Thymus Thymus
45 chr6:5262800-5268800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr6:5262800-5273600 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr6:5262800-5274400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr6:5262800-5277000 Weak transcription Pancreas Pancrea
49 chr6:5262800-5279000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr6:5262800-5287200 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015