Variant report

Variant rs2229933
Chromosome Location chr6:30857072-30857073
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:30853000-30861600 Weak transcription Small Intestine intestine
2 chr6:30854400-30857200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr6:30854400-30860600 Weak transcription Aorta Aorta
4 chr6:30854400-30862200 Weak transcription Liver Liver
5 chr6:30854600-30860000 Weak transcription Right Ventricle heart
6 chr6:30854600-30875400 Weak transcription Psoas Muscle Psoas
7 chr6:30854800-30857400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr6:30854800-30858600 Genic enhancers NHEK skin
9 chr6:30854800-30862600 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr6:30854800-30862600 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr6:30854800-30870000 Weak transcription Primary B cells from cord blood blood
12 chr6:30854800-30875200 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr6:30854800-30875400 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr6:30855000-30857200 Weak transcription Fetal Kidney kidney
15 chr6:30855000-30857600 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr6:30855000-30857600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr6:30855000-30857600 Weak transcription Fetal Brain Male brain
18 chr6:30855000-30857600 Weak transcription Rectal Smooth Muscle rectum
19 chr6:30855000-30857600 Weak transcription Stomach Mucosa stomach
20 chr6:30855000-30859200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr6:30855000-30868600 Strong transcription Fetal Intestine Small intestine
22 chr6:30855600-30868200 Strong transcription Fetal Intestine Large intestine
23 chr6:30855800-30857800 Weak transcription GM12878-XiMat blood
24 chr6:30856000-30867600 Strong transcription Rectal Mucosa Donor 31 rectum
25 chr6:30856000-30868200 Strong transcription iPS-20b Cell Line embryonic stem cell
26 chr6:30856000-30869200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr6:30856200-30857200 Flanking Active TSS Brain Angular Gyrus brain
28 chr6:30856200-30857800 Strong transcription H1 Cell Line embryonic stem cell
29 chr6:30856200-30857800 Genic enhancers Stomach Smooth Muscle stomach
30 chr6:30856200-30860400 Strong transcription iPS-18 Cell Line embryonic stem cell
31 chr6:30856200-30861600 Genic enhancers Breast Myoepithelial Primary Cells Breast
32 chr6:30856200-30867800 Strong transcription Placenta Amnion Placenta Amnion
33 chr6:30856200-30868000 Strong transcription Rectal Mucosa Donor 29 rectum
34 chr6:30856400-30857200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr6:30856400-30857200 Enhancers Right Atrium heart
36 chr6:30856400-30857600 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr6:30856400-30857800 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr6:30856400-30857800 Flanking Active TSS Brain Substantia Nigra brain
39 chr6:30856400-30857800 Genic enhancers Pancreas Pancrea
40 chr6:30856400-30858400 Genic enhancers Cortex derived primary cultured neurospheres brain
41 chr6:30856400-30858600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
42 chr6:30856400-30859200 Genic enhancers Fetal Thymus thymus
43 chr6:30856400-30859200 Genic enhancers Skeletal Muscle Female skeletal muscle
44 chr6:30856400-30860000 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr6:30856400-30860400 Genic enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr6:30856400-30861400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr6:30856400-30867400 Strong transcription iPS-15b Cell Line embryonic stem cell
48 chr6:30856400-30867800 Strong transcription Colonic Mucosa Colon
49 chr6:30856400-30868200 Strong transcription Primary T cells from cord blood blood
50 chr6:30856400-30868200 Strong transcription Duodenum Mucosa Duodenum

Quick Search:


  
Input of quick search could be:

what's new

Quick links