Variant report

Variant	rs6901464
Chromosome Location	chr6:30854090-30854091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr6:30851614-30854616	H1-hESC	embryonic stem cell:	n/a	chr6:30854237-30854248
2	BRCA1	chr6:30853989-30854401	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOXA2	chr6:30853203-30854330	A549	lung:	n/a	n/a
4	CEBPB	chr6:30853611-30854337	Hela-S3	cervix:	n/a	n/a
5	FOSL2	chr6:30853421-30854410	SK-N-SH	brain:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854028-30854038 chr6:30854026-30854037 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
6	STAT3	chr6:30853918-30854173	MCF10A-Er-Src	breast:	n/a	chr6:30854028-30854037 chr6:30854029-30854038
7	RAD21	chr6:30853752-30854178	SK-N-SH_RA	brain:	n/a	n/a
8	CEBPB	chr6:30853872-30854289	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr6:30853622-30854764	H1-neurons	neurons:	n/a	n/a
10	POLR2A	chr6:30853756-30854557	H1-hESC	embryonic stem cell:	n/a	n/a
11	CCNT2	chr6:30853923-30854385	K562	blood:	n/a	n/a
12	TAF1	chr6:30853735-30854668	H1-neurons	neurons:	n/a	n/a
13	MAX	chr6:30853837-30854533	H1-hESC	embryonic stem cell:	n/a	chr6:30854028-30854037 chr6:30854029-30854038 chr6:30854405-30854414
14	USF2	chr6:30853778-30854111	Hela-S3	cervix:	n/a	n/a
15	SP1	chr6:30853747-30854599	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr6:30853433-30854090	HepG2	liver:	n/a	n/a
17	RCOR1	chr6:30853577-30854527	K562	blood:	n/a	n/a
18	POLR2A	chr6:30853723-30854232	Hela-S3	cervix:	n/a	n/a
19	JUND	chr6:30852577-30854836	SK-N-SH	brain:	n/a	chr6:30854029-30854036 chr6:30852804-30852814 chr6:30852801-30852812 chr6:30854029-30854038 chr6:30852804-30852814 chr6:30854027-30854038 chr6:30852632-30852641 chr6:30852804-30852814 chr6:30854028-30854038 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037 chr6:30852804-30852814
20	CTCF	chr6:30853847-30854559	H1-hESC	embryonic stem cell:	n/a	chr6:30854439-30854457 chr6:30854441-30854454
21	MYBL2	chr6:30853640-30854221	HepG2	liver:	n/a	n/a
22	FOSL1	chr6:30853773-30854326	K562	blood:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854027-30854038 chr6:30854028-30854038 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
23	STAT3	chr6:30853876-30854110	Hela-S3	cervix:	n/a	chr6:30854028-30854037 chr6:30854029-30854038
24	POLR2A	chr6:30854060-30854468	A549	lung:	n/a	n/a
25	TAF1	chr6:30853876-30854125	SK-N-SH	brain:	n/a	n/a
26	MYC	chr6:30853957-30854472	K562	blood:	n/a	chr6:30854028-30854037 chr6:30854029-30854038 chr6:30854405-30854414
27	POLR2A	chr6:30852508-30854482	Hela-S3	cervix:	n/a	n/a
28	STAT3	chr6:30853859-30854189	MCF10A-Er-Src	breast:	n/a	chr6:30854028-30854037 chr6:30854029-30854038
29	ZKSCAN1	chr6:30853692-30854303	Hela-S3	cervix:	n/a	n/a
30	RAD21	chr6:30853539-30854171	Hela-S3	cervix:	n/a	n/a
31	MYC	chr6:30853299-30854188	MCF10A-Er-Src	breast:	n/a	chr6:30854028-30854037 chr6:30854029-30854038 chr6:30853729-30853739 chr6:30853369-30853379
32	MXI1	chr6:30851462-30854889	IMR90	lung:	n/a	chr6:30854399-30854414 chr6:30852833-30852842
33	FOS	chr6:30853843-30854216	MCF10A-Er-Src	breast:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854028-30854038 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
34	TBP	chr6:30853800-30854535	H1-hESC	embryonic stem cell:	n/a	n/a
35	TAF1	chr6:30853782-30854313	H1-hESC	embryonic stem cell:	n/a	n/a
36	FOSL1	chr6:30853808-30854167	K562	blood:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854027-30854038 chr6:30854028-30854038 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
37	TCF12	chr6:30853237-30854463	A549	lung:	n/a	chr6:30854306-30854316
38	JUND	chr6:30853776-30854293	A549	lung:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854027-30854038 chr6:30854028-30854038 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
39	TBP	chr6:30853751-30854170	Hela-S3	cervix:	n/a	n/a
40	FOXA2	chr6:30853732-30854176	HepG2	liver:	n/a	n/a
41	CTBP2	chr6:30854007-30854785	H1-hESC	embryonic stem cell:	n/a	n/a
42	RCOR1	chr6:30853910-30854504	K562	blood:	n/a	n/a
43	MAFK	chr6:30853858-30854157	Hela-S3	cervix:	n/a	chr6:30854027-30854036
44	JUND	chr6:30853779-30854220	HepG2	liver:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854027-30854038 chr6:30854028-30854038 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
45	ELK1	chr6:30853713-30854180	Hela-S3	cervix:	n/a	n/a
46	POLR2A	chr6:30853593-30854374	HCT-116	colon:	n/a	n/a
47	CBX3	chr6:30853754-30854492	K562	blood:	n/a	n/a
48	SP1	chr6:30853796-30854562	H1-hESC	embryonic stem cell:	n/a	n/a
49	FOSL2	chr6:30853717-30854374	MCF-7	breast:	n/a	chr6:30854029-30854036 chr6:30854029-30854038 chr6:30854028-30854038 chr6:30854026-30854037 chr6:30854029-30854037 chr6:30854027-30854039 chr6:30854028-30854037
50	MAX	chr6:30853073-30854238	MCF-7	breast:	n/a	chr6:30854028-30854037 chr6:30854029-30854038 chr6:30853729-30853739 chr6:30853369-30853379

No.	Distal block	Cell Line	Cell type
1	chr6:30850840..30855328-chr6:30877838..30882665,10	MCF-7	breast:
2	chr6:30456342..30459390-chr6:30850533..30854331,4	MCF-7	breast:
3	chr6:30847750..30854588-chr6:30880214..30885422,8	K562	blood:
4	chr6:30798389..30801828-chr6:30850243..30854490,5	MCF-7	breast:
5	chr6:30717879..30721732-chr6:30850020..30854415,6	MCF-7	breast:
6	chr6:30850549..30855941-chr6:30880357..30883667,13	MCF-7	breast:
7	chr6:30687338..30691474-chr6:30850428..30854318,11	MCF-7	breast:
8	chr6:30849184..30852666-chr6:30852715..30854490,5	K562	blood:
9	chr6:30710692..30712313-chr6:30853038..30855427,2	K562	blood:
10	chr6:30582976..30585649-chr6:30850283..30854979,5	MCF-7	breast:
11	chr6:30853891..30856446-chr6:30875282..30877202,3	K562	blood:
12	chr6:30705171..30717521-chr6:30843972..30856100,74	MCF-7	breast:
13	chr6:30704403..30722478-chr6:30842859..30858629,100	MCF-7	breast:
14	chr6:30848838..30854096-chr6:30874501..30878794,8	MCF-7	breast:
15	chr6:30581806..30587588-chr6:30850201..30854112,13	MCF-7	breast:
16	chr6:30455629..30458030-chr6:30852314..30855015,2	K562	blood:
17	chr6:30830444..30833119-chr6:30851282..30854552,3	MCF-7	breast:
18	chr6:30780598..30803497-chr6:30842531..30855110,80	MCF-7	breast:
19	chr6:30685105..30690458-chr6:30847596..30854595,13	MCF-7	breast:

Variant related genes	Relation type
MIR4640	TF binding region
DDR1	TF binding region
ENSG00000137411	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000137337	Chromatin interaction
ENSG00000264731	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000204592	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000263608	Chromatin interaction
ENSG00000214894	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000213780	Chromatin interaction
ENSG00000202241	Chromatin interaction
ENSG00000272273	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1049622	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1049628	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1052693	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10947111	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12206075	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215246	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215409	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419693	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074508	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2074509	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074510	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074511	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2074512	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2229933	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239517	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239518	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2284175	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2284176	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2285319	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2286655	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2524236	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2894055	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213644	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3218802	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3218803	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3218806	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3218814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3218815	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3757339	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3869085	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3869086	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3909130	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41288539	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4618569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711247	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4711249	0.80[AMR][1000 genomes]
rs4713402	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6457282	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921687	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6924600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743661	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756521	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761589	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8408	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916920	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9295929	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295931	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295932	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295933	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9295934	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357102	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366761	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9368646	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9378191	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380200	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380201	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394021	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9461638	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468842	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468844	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468846	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468847	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9501032	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501035	0.80[AMR][1000 genomes]
rs9501342	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv884109	chr6:30824532-30872203	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv884110	chr6:30845563-30856463	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv884111	chr6:30845563-30864279	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
9	nsv884112	chr6:30845563-30866618	Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	nsv601482	chr6:30846830-30854090	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	nsv884113	chr6:30846830-30857542	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv884114	chr6:30846830-30867830	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv884115	chr6:30847710-30858991	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
14	nsv884116	chr6:30848253-30864279	Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
15	nsv884117	chr6:30849124-30862423	Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
16	nsv884118	chr6:30849822-30855907	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
17	nsv884119	chr6:30849822-30856692	Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
18	nsv884120	chr6:30849822-30864279	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
19	nsv884121	chr6:30850191-30856692	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
20	nsv884122	chr6:30850191-30858991	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
21	nsv884123	chr6:30850191-30865904	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
22	nsv884124	chr6:30854090-30864279	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	18 gene(s)	inside rSNPs	diseases
23	nsv884125	chr6:30854090-30864829	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6901464	HIST1H2BJ	cis	parietal	SCAN
rs6901464	ZKSCAN4	cis	cerebellum	SCAN
rs6901464	VARS2	cis	lymphoblastoid	seeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30850600-30854600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:30850800-30854200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:30850800-30854400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:30851400-30854400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:30851800-30854200	Active TSS	Ovary	ovary
6	chr6:30852600-30854200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:30852600-30854200	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr6:30852600-30854400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:30852600-30854400	Flanking Active TSS	Colonic Mucosa	Colon
10	chr6:30852600-30854400	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr6:30852600-30854400	Flanking Active TSS	Fetal Intestine Large	intestine
12	chr6:30852600-30854400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
13	chr6:30852600-30854400	Flanking Active TSS	Pancreas	Pancrea
14	chr6:30852600-30854600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr6:30852600-30854600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:30852600-30854600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
17	chr6:30852600-30854600	Flanking Active TSS	Osteobl	bone
18	chr6:30852600-30854800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:30852600-30854800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:30852600-30854800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr6:30852600-30854800	Flanking Active TSS	K562	blood
22	chr6:30852600-30854800	Transcr. at gene 5' and 3'	NHEK	skin
23	chr6:30852600-30855000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:30852800-30854200	Flanking Active TSS	Thymus	Thymus
25	chr6:30852800-30854400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:30852800-30854400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
27	chr6:30852800-30854400	Flanking Active TSS	Gastric	stomach
28	chr6:30852800-30854600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:30852800-30854600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:30852800-30854600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr6:30852800-30854600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr6:30852800-30854600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
33	chr6:30852800-30854600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr6:30852800-30854600	Flanking Active TSS	GM12878-XiMat	blood
35	chr6:30852800-30854600	Flanking Active TSS	HSMM	muscle
36	chr6:30852800-30854600	Flanking Active TSS	NH-A	brain
37	chr6:30852800-30854800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:30852800-30854800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr6:30852800-30854800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:30852800-30854800	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr6:30852800-30855000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr6:30852800-30855000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:30852800-30855000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr6:30852800-30855000	Flanking Active TSS	Hela-S3	cervix
45	chr6:30852800-30855000	Flanking Active TSS	HMEC	breast
46	chr6:30853000-30854600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:30853000-30854600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:30853000-30854600	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr6:30853000-30854600	Flanking Active TSS	Fetal Lung	lung
50	chr6:30853000-30854800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood

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