Variant report

Variant	rs2236867
Chromosome Location	chr1:169592987-169592988
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10753788	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10753791	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10800459	0.94[ASN][1000 genomes]
rs10800460	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10800462	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10919210	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10919212	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12138071	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1569473	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1800807	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2142759	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2236866	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2244529	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2420379	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3917672	0.97[ASN][1000 genomes]
rs3917679	0.95[ASN][1000 genomes]
rs3917683	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3917688	0.95[ASN][1000 genomes]
rs3917698	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4450069	0.85[AMR][1000 genomes]
rs6427205	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6666554	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs732314	0.93[ASN][1000 genomes]
rs7415448	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7520518	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7530405	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7551819	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs764199	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9659257	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:169590600-169593600	Enhancers	Dnd41	blood
3	chr1:169590800-169595200	Weak transcription	Lung	lung
4	chr1:169591600-169599600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:169592200-169594200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:169592200-169594600	Enhancers	HUVEC	blood vessel
7	chr1:169592200-169594800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:169592200-169595600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:169592200-169597600	Enhancers	Primary T cells from cord blood	blood
10	chr1:169592200-169598400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:169592200-169599400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:169592200-169599600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:169592200-169599800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:169592400-169593200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:169592400-169593200	Enhancers	Thymus	Thymus
16	chr1:169592400-169593600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:169592400-169595000	Enhancers	Fetal Thymus	thymus
18	chr1:169592400-169596000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr1:169592600-169593600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:169592600-169594200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr1:169592600-169595000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:169592800-169594200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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