Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1011267	0.83[EUR][1000 genomes]
rs10800459	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10800463	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10919209	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10919211	0.85[AMR][1000 genomes]
rs11484813	0.85[AMR][1000 genomes]
rs11487550	0.83[AMR][1000 genomes]
rs12086443	0.85[AMR][1000 genomes]
rs1963141	0.81[AMR][1000 genomes]
rs2179171	0.81[AMR][1000 genomes]
rs2179188	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2236866	0.94[ASN][1000 genomes]
rs2236867	0.95[ASN][1000 genomes]
rs2244529	0.90[ASN][1000 genomes]
rs3917647	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3917672	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3917683	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs3917686	0.83[YRI][hapmap]
rs3917688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917698	0.95[ASN][1000 genomes]
rs4508079	0.82[AMR][1000 genomes]
rs6687517	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs732314	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7513508	0.85[AMR][1000 genomes]
rs7517544	0.85[AMR][1000 genomes]
rs7525857	0.81[AMR][1000 genomes]
rs7544874	0.81[AMR][1000 genomes]
rs764199	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3419871	chr1:169588028-169592726	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169584200-169592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:169585400-169592800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:169585600-169592200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:169588600-169592200	Weak transcription	HUVEC	blood vessel
6	chr1:169588800-169592200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:169590600-169593600	Enhancers	Dnd41	blood
8	chr1:169590800-169595200	Weak transcription	Lung	lung
9	chr1:169591000-169592200	Weak transcription	Primary T cells from cord blood	blood
10	chr1:169591600-169599600	Enhancers	Primary T helper cells PMA-I stimulated	--

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