Variant report

Variant	rs3917698
Chromosome Location	chr1:169588117-169588118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10753788	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10753791	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10800459	0.97[ASN][1000 genomes]
rs10800460	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10800462	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10919210	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10919212	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12138071	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1569473	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1800807	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2142759	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2236866	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2236867	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2244529	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2420379	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3917672	0.94[ASN][1000 genomes]
rs3917679	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3917683	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3917688	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4450069	0.84[AMR][1000 genomes]
rs6427205	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6666554	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs732314	0.90[ASN][1000 genomes]
rs7415448	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7520518	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7530405	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7551819	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs764199	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9659257	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3419871	chr1:169588028-169592726	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169584200-169592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:169585400-169592800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:169585600-169592200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:169586600-169589800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:169587200-169588600	Enhancers	HUVEC	blood vessel
7	chr1:169587400-169589800	Weak transcription	Lung	lung
8	chr1:169587600-169588200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:169587600-169588400	Enhancers	Primary T cells from cord blood	blood
10	chr1:169587600-169588400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:169587800-169588400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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