Variant report

Variant	rs2236905
Chromosome Location	chr1:209887697-209887698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12097899	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13306422	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1004343	chr1:209879304-209909385	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv525445	chr1:209885318-209912593	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1006632	chr1:209886202-209970355	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209878600-209888200	Weak transcription	Brain Angular Gyrus	brain
2	chr1:209878800-209893400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:209884000-209889000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:209885000-209888200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:209886400-209893200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:209886400-209896400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:209886600-209888000	Weak transcription	NHEK	skin
8	chr1:209886600-209889000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:209886600-209889000	Strong transcription	Liver	Liver
10	chr1:209886800-209888400	Enhancers	Brain Cingulate Gyrus	brain
11	chr1:209887000-209889000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:209887000-209889000	Enhancers	Brain Hippocampus Middle	brain
13	chr1:209887000-209889000	Enhancers	Brain Substantia Nigra	brain
14	chr1:209887200-209888200	Enhancers	HMEC	breast
15	chr1:209887400-209888200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:209887400-209889000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:209887400-209889200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:209887600-209887800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:209887600-209888400	Enhancers	Brain Anterior Caudate	brain
20	chr1:209887600-209889200	Enhancers	Placenta Amnion	Placenta Amnion

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