Variant report

Variant	rs2237492
Chromosome Location	chr7:15651901-15651902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10231999	0.88[EUR][1000 genomes]
rs10254079	0.93[EUR][1000 genomes]
rs10254129	0.93[EUR][1000 genomes]
rs10259769	0.96[EUR][1000 genomes]
rs10261246	0.90[EUR][1000 genomes]
rs10261835	0.93[EUR][1000 genomes]
rs10262513	0.93[EUR][1000 genomes]
rs10266294	0.93[EUR][1000 genomes]
rs10275641	0.93[EUR][1000 genomes]
rs11763320	0.81[AFR][1000 genomes]
rs12216556	0.93[EUR][1000 genomes]
rs12216628	0.93[EUR][1000 genomes]
rs12216674	0.93[EUR][1000 genomes]
rs12699738	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13227097	0.93[EUR][1000 genomes]
rs1548691	0.81[EUR][1000 genomes]
rs17199	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17334243	0.93[EUR][1000 genomes]
rs2107267	0.93[EUR][1000 genomes]
rs2189446	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2189449	0.93[EUR][1000 genomes]
rs2214505	0.92[EUR][1000 genomes]
rs2237496	0.81[EUR][1000 genomes]
rs2282932	0.88[EUR][1000 genomes]
rs28835422	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2892794	0.81[EUR][1000 genomes]
rs3779405	0.87[EUR][1000 genomes]
rs3779406	0.86[EUR][1000 genomes]
rs3801416	0.82[EUR][1000 genomes]
rs4141308	0.97[EUR][1000 genomes]
rs4326285	0.92[EUR][1000 genomes]
rs4377858	0.93[EUR][1000 genomes]
rs4436006	0.81[EUR][1000 genomes]
rs4466293	0.92[EUR][1000 genomes]
rs4492268	0.89[EUR][1000 genomes]
rs5015942	0.90[EUR][1000 genomes]
rs6461196	0.93[EUR][1000 genomes]
rs6461197	0.92[EUR][1000 genomes]
rs6461198	0.81[EUR][1000 genomes]
rs6949297	0.90[EUR][1000 genomes]
rs6950541	0.93[EUR][1000 genomes]
rs6953784	0.81[EUR][1000 genomes]
rs6955921	0.92[EUR][1000 genomes]
rs6956220	0.90[EUR][1000 genomes]
rs6958841	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6959221	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6960768	0.93[EUR][1000 genomes]
rs6961370	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6962943	0.89[EUR][1000 genomes]
rs6970492	0.92[EUR][1000 genomes]
rs7458404	0.92[EUR][1000 genomes]
rs7783223	0.97[EUR][1000 genomes]
rs7786661	0.81[EUR][1000 genomes]
rs7788718	0.89[EUR][1000 genomes]
rs7793128	0.92[EUR][1000 genomes]
rs7793310	0.93[EUR][1000 genomes]
rs7793334	0.93[EUR][1000 genomes]
rs7793459	0.93[EUR][1000 genomes]
rs7793498	0.93[EUR][1000 genomes]
rs7793546	0.89[EUR][1000 genomes]
rs7793547	0.90[EUR][1000 genomes]
rs7800473	0.97[EUR][1000 genomes]
rs7805746	0.80[EUR][1000 genomes]
rs7806599	0.90[EUR][1000 genomes]
rs7812247	0.93[EUR][1000 genomes]
rs9638727	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv887735	chr7:15625992-15698178	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv464392	chr7:15642053-15654614	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv606310	chr7:15642053-15654614	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
6	nsv1018250	chr7:15648861-15667882	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15640000-15662400	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:15640000-15663800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:15645400-15668200	Weak transcription	Right Ventricle	heart
4	chr7:15647600-15662400	Weak transcription	Left Ventricle	heart
5	chr7:15647800-15668000	Weak transcription	Fetal Stomach	stomach
6	chr7:15648000-15659800	Weak transcription	NHDF-Ad	bronchial
7	chr7:15648000-15664000	Weak transcription	Osteobl	bone
8	chr7:15648800-15652400	Strong transcription	Fetal Lung	lung
9	chr7:15651200-15652000	Strong transcription	Adipose Nuclei	Adipose
10	chr7:15651600-15652400	Active TSS	A549	lung

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