Variant report

Variant	rs2238187
Chromosome Location	chr14:72908102-72908103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72566736..72569585-chr14:72907798..72910689,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11158956	0.92[ASN][1000 genomes]
rs11623104	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11626915	0.88[ASN][1000 genomes]
rs12881810	0.83[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2238180	0.85[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2238183	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2283380	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs2283382	0.82[JPT][hapmap]
rs3784045	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3784047	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3825714	0.93[ASN][1000 genomes]
rs4903016	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7153117	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7156512	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs758266	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs758267	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72891000-72908600	Weak transcription	Left Ventricle	heart
2	chr14:72904800-72909000	Enhancers	Fetal Thymus	thymus
3	chr14:72905600-72908800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:72905600-72911200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:72905600-72912200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:72905800-72908600	Enhancers	Primary T cells from cord blood	blood
7	chr14:72905800-72908600	Enhancers	Primary hematopoietic stem cells	blood
8	chr14:72905800-72909200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr14:72906200-72908200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr14:72906200-72908200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:72906200-72908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:72906200-72908800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr14:72906600-72913600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:72907000-72909400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr14:72907000-72909800	Weak transcription	Primary B cells from cord blood	blood
16	chr14:72907000-72910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:72907000-72910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:72907000-72912000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr14:72907200-72908600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:72907200-72909600	Weak transcription	GM12878-XiMat	blood
21	chr14:72907200-72910000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr14:72907600-72908400	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:72907600-72908400	Enhancers	Lung	lung
24	chr14:72907800-72908800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:72907800-72909200	Enhancers	Dnd41	blood
26	chr14:72907800-72909800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr14:72907800-72910000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr14:72907800-72911400	Weak transcription	Gastric	stomach
29	chr14:72908000-72909400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:72908000-72910000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr14:72908000-72910000	Weak transcription	Spleen	Spleen

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