Variant report

Variant	rs2241727
Chromosome Location	chr12:49525008-49525009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr12:49523695-49526321	K562	blood:	n/a	chr12:49524068-49524078 chr12:49525404-49525413 chr12:49524068-49524079 chr12:49524067-49524077 chr12:49524069-49524078 chr12:49524068-49524079 chr12:49524067-49524080 chr12:49524069-49524078 chr12:49524070-49524077 chr12:49524069-49524079 chr12:49524067-49524080
2	CHD2	chr12:49524953-49525173	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr12:49524875-49525546	HepG2	liver:	n/a	n/a
4	HMGN3	chr12:49523942-49525569	K562	blood:	n/a	n/a
5	POLR2A	chr12:49523854-49525647	H1-neurons	neurons:	n/a	n/a
6	TAF1	chr12:49524941-49525568	GM12891	blood:	n/a	n/a
7	POLR2A	chr12:49523570-49525647	MCF-7	breast:	n/a	n/a
8	POLR2A	chr12:49522817-49525243	GM12891	blood:	n/a	n/a
9	POLR2A	chr12:49523612-49525631	GM12892	blood:	n/a	n/a
10	POLR2A	chr12:49522738-49526030	GM12891	blood:	n/a	n/a
11	JUND	chr12:49523830-49525632	A549	lung:	n/a	chr12:49525224-49525233
12	POLR2A	chr12:49523953-49525618	MCF-7	breast:	n/a	n/a
13	POLR2A	chr12:49523904-49526190	Raji	blood:	n/a	n/a
14	REST	chr12:49524927-49525236	HepG2	liver:	n/a	chr12:49525014-49525024
15	PML	chr12:49523504-49526012	K562	blood:	n/a	n/a
16	MAZ	chr12:49523891-49526135	Hela-S3	cervix:	n/a	chr12:49524068-49524078 chr12:49525404-49525413 chr12:49524068-49524079 chr12:49524069-49524078 chr12:49524068-49524079 chr12:49524067-49524080 chr12:49524069-49524078 chr12:49524070-49524077 chr12:49524069-49524079 chr12:49524067-49524080
17	TAF1	chr12:49524909-49525557	GM12892	blood:	n/a	n/a
18	FOSL2	chr12:49524914-49525584	HepG2	liver:	n/a	chr12:49525224-49525233
19	TBP	chr12:49523914-49527115	Hela-S3	cervix:	n/a	n/a
20	CREB1	chr12:49523893-49525581	A549	lung:	n/a	n/a
21	CREB1	chr12:49523838-49525750	GM12878	blood:	n/a	n/a
22	ATF2	chr12:49525007-49525915	GM12878	blood:	n/a	n/a
23	POLR2A	chr12:49523877-49525295	HepG2	liver:	n/a	n/a
24	CBX3	chr12:49523670-49525688	K562	blood:	n/a	n/a
25	YY1	chr12:49523886-49525612	K562	blood:	n/a	chr12:49525344-49525355 chr12:49525211-49525222 chr12:49525346-49525355 chr12:49525222-49525233
26	ELF1	chr12:49524986-49525536	K562	blood:	n/a	n/a
27	HEY1	chr12:49523110-49525282	HepG2	liver:	n/a	chr12:49525016-49525031 chr12:49523999-49524014 chr12:49525182-49525197
28	POU2F2	chr12:49523817-49525270	GM12891	blood:	n/a	chr12:49525219-49525231 chr12:49525214-49525226
29	PAX5	chr12:49524899-49525648	GM12878	blood:	n/a	chr12:49525171-49525190 chr12:49525633-49525642 chr12:49525342-49525351 chr12:49525630-49525639
30	RELA	chr12:49523953-49525606	GM15510	blood:	n/a	n/a
31	PAX5	chr12:49524947-49525253	GM12878	blood:	n/a	chr12:49525171-49525190
32	POLR2A	chr12:49523942-49525607	HepG2	liver:	n/a	n/a
33	POLR2A	chr12:49522676-49525736	HUVEC	blood vessel:	n/a	n/a
34	MAFK	chr12:49523892-49525227	Hela-S3	cervix:	n/a	n/a
35	REST	chr12:49524570-49525285	PANC-1	pancreas:	n/a	chr12:49525014-49525024
36	YY1	chr12:49523866-49525617	GM12878	blood:	n/a	chr12:49525344-49525355 chr12:49525211-49525222 chr12:49525346-49525355 chr12:49525222-49525233
37	EP300	chr12:49524382-49525122	HepG2	liver:	n/a	chr12:49524684-49524698 chr12:49524685-49524694
38	BHLHE40	chr12:49523882-49525510	HepG2	liver:	n/a	chr12:49525180-49525196 chr12:49525292-49525308
39	KAT2A	chr12:49523723-49525210	Hela-S3	cervix:	n/a	n/a
40	MYC	chr12:49523585-49525901	A549	lung:	n/a	chr12:49524068-49524078 chr12:49525404-49525413 chr12:49524068-49524079 chr12:49524067-49524077 chr12:49524069-49524078 chr12:49524068-49524079 chr12:49524067-49524080 chr12:49524069-49524078 chr12:49524070-49524077 chr12:49524069-49524079 chr12:49524067-49524080
41	FOXA2	chr12:49524537-49525469	A549	lung:	n/a	n/a
42	ZNF143	chr12:49524997-49525511	GM12878	blood:	n/a	chr12:49525010-49525028 chr12:49525013-49525023 chr12:49525187-49525197 chr12:49525031-49525050
43	TAF1	chr12:49523986-49525585	HepG2	liver:	n/a	n/a
44	MAX	chr12:49523657-49525698	SK-N-SH	brain:	n/a	chr12:49524068-49524078 chr12:49525404-49525413 chr12:49524068-49524079 chr12:49524067-49524077 chr12:49524069-49524078 chr12:49524068-49524079 chr12:49524067-49524080 chr12:49524069-49524078 chr12:49524070-49524077 chr12:49524069-49524079 chr12:49524067-49524080
45	TAF1	chr12:49524004-49525547	H1-hESC	embryonic stem cell:	n/a	n/a
46	MXI1	chr12:49523886-49525706	H1-hESC	embryonic stem cell:	n/a	n/a
47	PML	chr12:49523961-49525629	MCF-7	breast:	n/a	n/a
48	POLR2A	chr12:49523428-49525663	HL-60	blood:	n/a	n/a
49	MXI1	chr12:49523654-49526079	GM12878	blood:	n/a	n/a
50	POU2F2	chr12:49524897-49525279	GM12878	blood:	n/a	chr12:49525219-49525231 chr12:49525214-49525226

No.	Distal block	Cell Line	Cell type
1	chr12:49523706..49526236-chr12:50134306..50136655,2	K562	blood:
2	chr12:49477289..49493962-chr12:49512467..49528127,64	K562	blood:
3	chr12:49522979..49526796-chr12:49655970..49661455,13	MCF-7	breast:
4	chr12:49524973..49525506-chr15:40453128..40453715,2	HCT-116	colon:
5	chr12:49524905..49525568-chr13:99738833..99739433,2	Hela-S3	cervix:
6	chr12:49387824..49389394-chr12:49523578..49525340,2	K562	blood:
7	chr12:49524663..49525531-chr20:44420455..44421368,2	HCT-116	colon:
8	chr12:49349007..49352698-chr12:49523718..49526243,3	K562	blood:
9	chr12:49410733..49415536-chr12:49523564..49526910,8	K562	blood:
10	chr12:49395492..49398353-chr12:49523605..49526293,2	K562	blood:
11	chr12:49523171..49526001-chr12:49621210..49624929,3	MCF-7	breast:
12	chr12:49478072..49490419-chr12:49518907..49527034,52	K562	blood:
13	chr12:49523620..49525401-chr6:83775446..83777395,2	K562	blood:
14	chr12:49408415..49414757-chr12:49522619..49525582,9	MCF-7	breast:
15	chr1:154946234..154947008-chr12:49524666..49525601,2	Hela-S3	cervix:
16	chr1:78469721..78470513-chr12:49524722..49525238,2	NB4	blood:
17	chr12:49425028..49428034-chr12:49523264..49526467,3	MCF-7	breast:
18	chr12:49524593..49525144-chr3:49395250..49396023,2	Hela-S3	cervix:
19	chr12:3067756..3068750-chr12:49524687..49525383,2	Hela-S3	cervix:
20	chr1:28974716..28975272-chr12:49524703..49525396,2	Hela-S3	cervix:
21	chr1:32816354..32817294-chr12:49524489..49525381,2	Hela-S3	cervix:
22	chr12:49500412..49506796-chr12:49520694..49526646,13	MCF-7	breast:
23	chr12:49524677..49525571-chr9:80850924..80851480,2	Hela-S3	cervix:
24	chr12:49524416..49525157-chr19:47760741..47761642,2	Hela-S3	cervix:
25	chr12:49524221..49525221-chr16:90038565..90039231,2	HCT-116	colon:
26	chr12:49524630..49525428-chr16:810534..811447,2	Hela-S3	cervix:
27	chr12:49524706..49525535-chr5:162887021..162887669,2	Hela-S3	cervix:
28	chr12:49524653..49525194-chr17:79669506..79670385,2	Hela-S3	cervix:
29	chr12:49524294..49525149-chr2:42720578..42721463,2	HCT-116	colon:
30	chr12:49519485..49526890-chr12:49616239..49624332,15	K562	blood:
31	chr12:49524896..49525814-chr6:30034660..30035259,2	Hela-S3	cervix:
32	chr12:49494880..49496808-chr12:49524661..49526634,2	MCF-7	breast:
33	chr11:8704163..8704892-chr12:49524653..49525239,2	Hela-S3	cervix:
34	chr1:149858292..149859127-chr12:49524232..49525283,3	Hela-S3	cervix:
35	chr12:49524707..49525421-chr3:23958490..23959051,2	Hela-S3	cervix:
36	chr12:49524716..49525586-chr6:26103705..26104546,2	Hela-S3	cervix:
37	chr11:93474439..93475045-chr12:49524654..49525322,2	Hela-S3	cervix:
38	chr12:49524838..49525414-chr16:50186556..50187257,2	Hela-S3	cervix:
39	chr12:49524688..49525339-chr3:3168509..3169164,2	Hela-S3	cervix:
40	chr12:49523298..49526534-chr12:49578242..49583023,5	K562	blood:
41	chr12:49524135..49525075-chr5:95066891..95067688,2	Hela-S3	cervix:
42	chr12:49524596..49525216-chr2:86422054..86422794,3	Hela-S3	cervix:
43	chr12:49524727..49525240-chr9:35072176..35072840,2	Hela-S3	cervix:
44	chr12:49412128..49415221-chr12:49522907..49525212,5	MCF-7	breast:
45	chr12:49524914..49525625-chr3:179280320..179281102,2	Hela-S3	cervix:
46	chr11:94226287..94227152-chr12:49524847..49525416,2	Hela-S3	cervix:
47	chr12:49524736..49525428-chr14:24911238..24912051,2	Hela-S3	cervix:
48	chr12:49524986..49525628-chr12:120729373..120729901,2	Hela-S3	cervix:
49	chr12:49524620..49525610-chr17:41465190..41466376,3	NB4	blood:
50	chr1:119682375..119683295-chr12:49524573..49525496,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TUBA1C-1	chr12:49524954-49525164	ENSG00000258017.1

Variant related genes	Relation type
TUBA1B	TF binding region
ENSG00000258017	TF binding region
ENSG00000146834	Chromatin interaction
ENSG00000164292	Chromatin interaction
ENSG00000101457	Chromatin interaction
ENSG00000116874	Chromatin interaction
ENSG00000162526	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000116668	Chromatin interaction
ENSG00000144224	Chromatin interaction
ENSG00000197885	Chromatin interaction
ENSG00000136518	Chromatin interaction
ENSG00000135406	Chromatin interaction
ENSG00000167552	Chromatin interaction
ENSG00000177946	Chromatin interaction
ENSG00000257913	Chromatin interaction
ENSG00000152518	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000154174	Chromatin interaction
ENSG00000088387	Chromatin interaction
ENSG00000064313	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000167550	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000156970	Chromatin interaction
ENSG00000231365	Chromatin interaction
ENSG00000180035	Chromatin interaction
ENSG00000258101	Chromatin interaction
ENSG00000083097	Chromatin interaction
ENSG00000072756	Chromatin interaction
ENSG00000012983	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000105321	Chromatin interaction
ENSG00000132305	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000072571	Chromatin interaction
ENSG00000139131	Chromatin interaction
ENSG00000171126	Chromatin interaction
ENSG00000164307	Chromatin interaction
ENSG00000160691	Chromatin interaction
ENSG00000273338	Chromatin interaction
ENSG00000102854	Chromatin interaction
ENSG00000186897	Chromatin interaction
ENSG00000200997	Chromatin interaction
ENSG00000117616	Chromatin interaction
ENSG00000257346	Chromatin interaction
ENSG00000197958	Chromatin interaction
ENSG00000182919	Chromatin interaction
ENSG00000181929	Chromatin interaction
ENSG00000020922	Chromatin interaction
ENSG00000164327	Chromatin interaction
ENSG00000164405	Chromatin interaction
ENSG00000166710	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000233276	Chromatin interaction
ENSG00000165280	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000197905	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000148019	Chromatin interaction
ENSG00000167535	Chromatin interaction
ENSG00000171530	Chromatin interaction
ENSG00000181744	Chromatin interaction
ENSG00000121274	Chromatin interaction
ENSG00000181418	Chromatin interaction
ENSG00000167553	Chromatin interaction
ENSG00000262049	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000258283	Chromatin interaction
ENSG00000148356	Chromatin interaction
ENSG00000141499	Chromatin interaction
ENSG00000134287	Chromatin interaction
ENSG00000139644	Chromatin interaction
ENSG00000223959	Chromatin interaction
ENSG00000170584	Chromatin interaction
ENSG00000174748	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000180209	Chromatin interaction
ENSG00000166888	Chromatin interaction
ENSG00000168876	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000124116	Chromatin interaction
ENSG00000120137	Chromatin interaction
ENSG00000118420	Chromatin interaction
ENSG00000079432	Chromatin interaction
ENSG00000206535	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000273080	Chromatin interaction
ENSG00000110844	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000204619	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000187778	Chromatin interaction
ENSG00000145743	Chromatin interaction
ENSG00000099899	Chromatin interaction
ENSG00000136521	Chromatin interaction
ENSG00000167548	Chromatin interaction
ENSG00000214391	Chromatin interaction
ENSG00000121486	Chromatin interaction
ENSG00000272822	Chromatin interaction
ENSG00000066117	Chromatin interaction
ENSG00000164404	Chromatin interaction
ENSG00000139636	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000139549	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1039225	0.83[EUR][1000 genomes]
rs1057548	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10747561	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10747562	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10783302	0.92[ASN][1000 genomes]
rs10783304	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10783306	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10783307	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10783308	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10875922	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875924	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10875925	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875927	0.89[EUR][1000 genomes]
rs10875928	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10875929	0.85[EUR][1000 genomes]
rs10875930	0.87[EUR][1000 genomes]
rs10875931	0.86[EUR][1000 genomes]
rs11168862	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168867	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168874	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168882	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168883	0.84[EUR][1000 genomes]
rs11168884	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168885	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168888	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11168890	0.91[EUR][1000 genomes]
rs11168894	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11168895	0.88[EUR][1000 genomes]
rs11168901	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11168902	0.85[EUR][1000 genomes]
rs11168903	0.85[EUR][1000 genomes]
rs11168904	0.86[EUR][1000 genomes]
rs11168909	0.83[EUR][1000 genomes]
rs11168910	0.82[EUR][1000 genomes]
rs11837207	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12227296	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12227610	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12227770	0.86[EUR][1000 genomes]
rs12228775	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12229524	0.86[EUR][1000 genomes]
rs12229529	0.86[EUR][1000 genomes]
rs12306494	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12318740	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12579015	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1476137	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476138	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1874908	0.84[EUR][1000 genomes]
rs1991427	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1991428	0.85[EUR][1000 genomes]
rs2016107	0.82[EUR][1000 genomes]
rs2047101	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2114845	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2114846	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2162643	0.85[EUR][1000 genomes]
rs2162644	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2279596	0.92[ASN][1000 genomes]
rs2334930	0.86[EUR][1000 genomes]
rs2334931	0.86[EUR][1000 genomes]
rs2753	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878287	0.87[EUR][1000 genomes]
rs35884657	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3741621	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57853986	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58336603	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58711211	0.86[EUR][1000 genomes]
rs6580701	0.86[EUR][1000 genomes]
rs6580703	0.84[EUR][1000 genomes]
rs697624	0.82[EUR][1000 genomes]
rs73110168	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7311346	0.86[EUR][1000 genomes]
rs731350	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7953169	0.86[EUR][1000 genomes]
rs7954521	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7954530	0.86[EUR][1000 genomes]
rs7957983	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7957998	0.86[EUR][1000 genomes]
rs7958241	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7958572	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969963	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969967	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7976890	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978448	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7978659	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9325145	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739878	0.85[EUR][1000 genomes]
rs9788139	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051161	chr12:49314550-49828473	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv541489	chr12:49314550-49828473	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
3	nsv1036452	chr12:49376285-49867760	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	315 gene(s)	inside rSNPs	diseases
4	nsv975485	chr12:49521410-49525683	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	124 gene(s)	inside rSNPs	diseases
5	esv3417605	chr12:49521878-49578961	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49522800-49525200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr12:49523200-49525200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr12:49523400-49525200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
4	chr12:49523400-49525200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr12:49523600-49525200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:49523600-49525200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
7	chr12:49523600-49525600	Active TSS	Small Intestine	intestine
8	chr12:49523600-49525800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:49523600-49526000	Active TSS	Right Ventricle	heart
10	chr12:49523800-49525200	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr12:49523800-49525200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr12:49523800-49525600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:49523800-49525600	Active TSS	Lung	lung
14	chr12:49523800-49525600	Active TSS	HSMMtube	muscle
15	chr12:49523800-49525800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:49523800-49526200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr12:49523800-49526200	Active TSS	Esophagus	oesophagus
18	chr12:49523800-49527200	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr12:49524000-49525200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:49524000-49525200	Active TSS	Spleen	Spleen
21	chr12:49524000-49525400	Transcr. at gene 5' and 3'	Right Atrium	heart
22	chr12:49524000-49525600	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr12:49524000-49525600	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr12:49524000-49525600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:49524000-49525600	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr12:49524000-49525600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr12:49524000-49525600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr12:49524000-49525600	Active TSS	Brain Angular Gyrus	brain
29	chr12:49524000-49525600	Active TSS	Brain Substantia Nigra	brain
30	chr12:49524000-49525600	Active TSS	Colon Smooth Muscle	Colon
31	chr12:49524000-49525600	Active TSS	Fetal Kidney	kidney
32	chr12:49524000-49525600	Active TSS	Gastric	stomach
33	chr12:49524000-49525600	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr12:49524000-49525600	Active TSS	Stomach Mucosa	stomach
35	chr12:49524000-49525800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:49524000-49525800	Active TSS	Brain Anterior Caudate	brain
37	chr12:49524000-49525800	Active TSS	Thymus	Thymus
38	chr12:49524000-49526000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr12:49524000-49526000	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr12:49524000-49526000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr12:49524000-49526200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:49524000-49526200	Active TSS	Psoas Muscle	Psoas
43	chr12:49524000-49526600	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr12:49524000-49526800	Active TSS	GM12878-XiMat	blood
45	chr12:49524000-49527000	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr12:49524000-49527200	Active TSS	Fetal Brain Female	brain
47	chr12:49524000-49527400	Active TSS	Brain Germinal Matrix	brain
48	chr12:49524000-49527400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr12:49524000-49527600	Active TSS	Aorta	Aorta
50	chr12:49524200-49525600	Active TSS	Primary T cells from cord blood	blood

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