Variant report

Variant	rs2249045
Chromosome Location	chr12:104815134-104815135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2248343	0.97[EUR][1000 genomes]
rs2248939	0.97[EUR][1000 genomes]
rs2249041	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2251917	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2252144	0.94[EUR][1000 genomes]
rs2252514	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2252543	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2254984	0.97[EUR][1000 genomes]
rs2264767	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2264770	0.94[EUR][1000 genomes]
rs2464677	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2464679	0.94[EUR][1000 genomes]
rs2468910	0.97[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104808600-104816200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:104808800-104824200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:104811000-104817200	Weak transcription	Fetal Thymus	thymus
4	chr12:104814200-104815200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:104814600-104815200	Enhancers	HUVEC	blood vessel
6	chr12:104814800-104815200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:104814800-104815200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:104814800-104815200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:104814800-104815200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:104814800-104815200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:104814800-104815200	Enhancers	Thymus	Thymus
12	chr12:104814800-104815400	Enhancers	HMEC	breast
13	chr12:104814800-104816600	Enhancers	Hela-S3	cervix
14	chr12:104815000-104815200	Enhancers	Placenta	Placenta
15	chr12:104815000-104815200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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