Variant report

Variant	rs2252543
Chromosome Location	chr12:104809189-104809190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2248343	0.87[EUR][1000 genomes]
rs2248939	0.88[EUR][1000 genomes]
rs2249041	0.88[EUR][1000 genomes]
rs2249045	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2251917	0.88[EUR][1000 genomes]
rs2252144	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2252514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254984	0.87[EUR][1000 genomes]
rs2264767	0.88[EUR][1000 genomes]
rs2264770	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2464677	0.88[EUR][1000 genomes]
rs2464679	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2468910	0.87[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104802200-104809800	Weak transcription	Thymus	Thymus
2	chr12:104805400-104809600	Enhancers	Placenta	Placenta
3	chr12:104805600-104809400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:104806200-104809400	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:104806600-104809400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:104807400-104810200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:104807600-104809200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:104807600-104809800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:104808200-104809200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr12:104808400-104810400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:104808600-104810600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:104808600-104810600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:104808600-104816200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:104808800-104809200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr12:104808800-104809400	Enhancers	Hela-S3	cervix
16	chr12:104808800-104824200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:104809000-104809200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr12:104809000-104809200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
19	chr12:104809000-104811000	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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