Variant report

Variant	rs2254984
Chromosome Location	chr12:104837294-104837295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12305866	0.87[AMR][1000 genomes]
rs12306097	0.87[AMR][1000 genomes]
rs12306106	0.87[AMR][1000 genomes]
rs2248343	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2248939	0.94[EUR][1000 genomes]
rs2249041	0.94[EUR][1000 genomes]
rs2249045	0.97[EUR][1000 genomes]
rs2251917	0.94[EUR][1000 genomes]
rs2252144	0.90[EUR][1000 genomes]
rs2252514	0.87[EUR][1000 genomes]
rs2252543	0.87[EUR][1000 genomes]
rs2264767	0.94[EUR][1000 genomes]
rs2264770	0.90[EUR][1000 genomes]
rs2464677	0.94[EUR][1000 genomes]
rs2464679	0.91[EUR][1000 genomes]
rs2468910	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71468212	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832502	chr12:104833729-104908288	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104837000-104837600	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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