Variant report

Variant	rs2249581
Chromosome Location	chr1:159144581-159144582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2249866	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249872	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253114	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253837	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2814773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28695249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159143000-159156800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:159143200-159155600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:159143400-159144600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:159143400-159146000	Enhancers	Fetal Brain Male	brain
5	chr1:159143400-159150200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:159143400-159151600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:159143600-159145200	Enhancers	Brain Hippocampus Middle	brain
8	chr1:159143600-159155800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:159143600-159157600	Weak transcription	Placenta	Placenta
10	chr1:159144000-159145800	Enhancers	Brain Angular Gyrus	brain
11	chr1:159144000-159154200	Weak transcription	Brain Germinal Matrix	brain
12	chr1:159144200-159144800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:159144200-159144800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:159144400-159145000	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr1:159144400-159145600	Enhancers	Fetal Brain Female	brain
16	chr1:159144400-159145800	Enhancers	Brain Anterior Caudate	brain
17	chr1:159144400-159146600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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