Variant report

Variant	rs2253837
Chromosome Location	chr1:159156296-159156297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159155279..159157272-chr1:159160097..159162875,2	K562	blood:
2	chr1:159147315..159148979-chr1:159156262..159158868,2	K562	blood:

Variant related genes	Relation type
ENSG00000222552	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2249581	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249866	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2249872	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253114	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2814773	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2852714	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2852715	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28695249	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3026996	0.82[EUR][1000 genomes]
rs3027001	0.80[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159143000-159156800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:159143600-159157600	Weak transcription	Placenta	Placenta
3	chr1:159145000-159157400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:159148800-159157800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:159152000-159157400	Weak transcription	Fetal Brain Male	brain
6	chr1:159152200-159157600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:159154200-159157000	Enhancers	Brain Germinal Matrix	brain
8	chr1:159154800-159156400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:159155200-159156400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:159155200-159157200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:159155200-159157400	Weak transcription	Brain Anterior Caudate	brain
12	chr1:159155800-159156400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:159155800-159156400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:159156000-159156600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:159156000-159156600	Enhancers	Fetal Brain Female	brain
16	chr1:159156000-159156800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:159156200-159156400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:159156200-159156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:159156200-159156600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:159156200-159156600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:159156200-159157400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links