Variant report

Variant	rs2265263
Chromosome Location	chr10:24838291-24838292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11014145	0.85[CEU][hapmap]
rs11014150	0.92[ASN][1000 genomes]
rs11014151	0.92[ASN][1000 genomes]
rs11014153	0.92[ASN][1000 genomes]
rs12242020	0.92[ASN][1000 genomes]
rs12242176	1.00[CHB][hapmap];0.86[YRI][hapmap];0.92[ASN][1000 genomes]
rs2246358	0.86[EUR][1000 genomes]
rs2246694	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2249894	0.82[EUR][1000 genomes]
rs2249895	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2249909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265261	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2265264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60030083	0.92[ASN][1000 genomes]
rs61048438	0.92[ASN][1000 genomes]
rs7894922	0.92[ASN][1000 genomes]
rs7906230	0.92[ASN][1000 genomes]
rs7906758	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037958	chr10:24806631-24901088	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24808600-24838600	Strong transcription	Placenta Amnion	Placenta Amnion
2	chr10:24808600-24839200	Strong transcription	Liver	Liver
3	chr10:24808600-24841600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:24809200-24845400	Weak transcription	Brain Substantia Nigra	brain
5	chr10:24819400-24839400	Strong transcription	Left Ventricle	heart
6	chr10:24822400-24841200	Weak transcription	Small Intestine	intestine
7	chr10:24822600-24843400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:24822800-24840200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:24822800-24840400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:24823200-24840000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:24823400-24840200	Weak transcription	Placenta	Placenta
12	chr10:24823400-24841800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:24827200-24840000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:24828800-24839400	Weak transcription	HSMMtube	muscle
15	chr10:24829000-24845000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:24831000-24840600	Weak transcription	Stomach Mucosa	stomach
17	chr10:24831400-24840000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:24832000-24841200	Weak transcription	Colonic Mucosa	Colon
19	chr10:24832200-24838800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:24832400-24843200	Weak transcription	Psoas Muscle	Psoas
21	chr10:24833600-24839600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:24834600-24842200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:24835000-24840400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:24835000-24842200	Weak transcription	HepG2	liver
25	chr10:24835000-24845800	Weak transcription	Right Ventricle	heart
26	chr10:24835200-24839800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:24835200-24839800	Weak transcription	Gastric	stomach
28	chr10:24835200-24840000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:24835200-24840000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:24835200-24840000	Weak transcription	Fetal Lung	lung
31	chr10:24835200-24840200	Weak transcription	NHEK	skin
32	chr10:24835200-24840400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:24835200-24840400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:24835200-24840400	Weak transcription	Esophagus	oesophagus
35	chr10:24835200-24840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:24835200-24840800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:24835200-24840800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:24835200-24841200	Weak transcription	Pancreas	Pancrea
39	chr10:24835200-24841400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:24835200-24841600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:24835200-24842800	Weak transcription	Fetal Kidney	kidney
42	chr10:24835200-24843200	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:24835200-24845200	Weak transcription	Spleen	Spleen
44	chr10:24835200-24845600	Weak transcription	Ovary	ovary
45	chr10:24835200-24845800	Weak transcription	Lung	lung
46	chr10:24835400-24839800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:24835400-24840000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:24835600-24838600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:24835600-24838800	Weak transcription	NHDF-Ad	bronchial
50	chr10:24835600-24840200	Weak transcription	Rectal Mucosa Donor 31	rectum

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