The 2.0 version of rSNPBase

Variant report

Variant rs60030083
Chromosome Location chr10:24840114-24840115
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:24808600-24841600 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr10:24809200-24845400 Weak transcription Brain Substantia Nigra brain
3 chr10:24822400-24841200 Weak transcription Small Intestine intestine
4 chr10:24822600-24843400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr10:24822800-24840200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr10:24822800-24840400 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr10:24823400-24840200 Weak transcription Placenta Placenta
8 chr10:24823400-24841800 Weak transcription H9 Cell Line embryonic stem cell
9 chr10:24829000-24845000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr10:24831000-24840600 Weak transcription Stomach Mucosa stomach
11 chr10:24832000-24841200 Weak transcription Colonic Mucosa Colon
12 chr10:24832400-24843200 Weak transcription Psoas Muscle Psoas
13 chr10:24834600-24842200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr10:24835000-24840400 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr10:24835000-24842200 Weak transcription HepG2 liver
16 chr10:24835000-24845800 Weak transcription Right Ventricle heart
17 chr10:24835200-24840200 Weak transcription NHEK skin
18 chr10:24835200-24840400 Weak transcription H1 Cell Line embryonic stem cell
19 chr10:24835200-24840400 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr10:24835200-24840400 Weak transcription Esophagus oesophagus
21 chr10:24835200-24840600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr10:24835200-24840800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr10:24835200-24840800 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr10:24835200-24841200 Weak transcription Pancreas Pancrea
25 chr10:24835200-24841400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr10:24835200-24841600 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr10:24835200-24842800 Weak transcription Fetal Kidney kidney
28 chr10:24835200-24843200 Weak transcription Fetal Muscle Leg muscle
29 chr10:24835200-24845200 Weak transcription Spleen Spleen
30 chr10:24835200-24845600 Weak transcription Ovary ovary
31 chr10:24835200-24845800 Weak transcription Lung lung
32 chr10:24835600-24840200 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr10:24835600-24840400 Weak transcription HMEC breast
34 chr10:24835600-24840600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr10:24835600-24841800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr10:24835600-24845600 Weak transcription NH-A brain
37 chr10:24836000-24841200 Weak transcription Osteobl bone
38 chr10:24836600-24840800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr10:24836600-24840800 Strong transcription Fetal Intestine Small intestine
40 chr10:24836800-24842000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr10:24837000-24843600 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr10:24838200-24840200 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr10:24838600-24841000 Weak transcription Placenta Amnion Placenta Amnion
44 chr10:24838800-24841400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr10:24838800-24841600 Weak transcription Fetal Intestine Large intestine
46 chr10:24839200-24840800 Weak transcription Fetal Stomach stomach
47 chr10:24839200-24845800 Weak transcription Liver Liver
48 chr10:24839400-24842400 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr10:24839400-24845800 Weak transcription Left Ventricle heart
50 chr10:24839800-24841600 Enhancers Gastric stomach

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Last update: Aug 31, 2015