The 2.0 version of rSNPBase

Variant report

Variant rs2268937
Chromosome Location chr3:179448869-179448870
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179391000-179452200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr3:179399000-179459800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr3:179406600-179449400 Weak transcription Spleen Spleen
5 chr3:179420200-179478800 Weak transcription Rectal Smooth Muscle rectum
6 chr3:179422800-179460600 Weak transcription Duodenum Mucosa Duodenum
7 chr3:179424000-179474800 Weak transcription Fetal Kidney kidney
8 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr3:179427000-179457600 Weak transcription Thymus Thymus
10 chr3:179427400-179449200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr3:179428800-179452200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr3:179428800-179456800 Weak transcription HUVEC blood vessel
13 chr3:179428800-179460000 Weak transcription Brain Substantia Nigra brain
14 chr3:179429000-179466200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr3:179434400-179449200 Weak transcription Fetal Heart heart
16 chr3:179434400-179450600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr3:179434600-179452200 Weak transcription A549 lung
18 chr3:179435200-179449200 Weak transcription Muscle Satellite Cultured Cells --
19 chr3:179435400-179450600 Weak transcription HSMMtube muscle
20 chr3:179435600-179460000 Weak transcription NHDF-Ad bronchial
21 chr3:179436000-179459800 Weak transcription Small Intestine intestine
22 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr3:179438200-179452200 Weak transcription ES-WA7 Cell Line embryonic stem cell
25 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr3:179439600-179452200 Weak transcription NHEK skin
27 chr3:179439800-179452400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr3:179440800-179449400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr3:179441000-179449000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr3:179441000-179449000 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
32 chr3:179441200-179460600 Weak transcription Brain Cingulate Gyrus brain
33 chr3:179441400-179459800 Weak transcription Hela-S3 cervix
34 chr3:179444200-179449000 Weak transcription Psoas Muscle Psoas
35 chr3:179444200-179460000 Weak transcription Pancreas Pancrea
36 chr3:179444400-179449200 Weak transcription Brain Hippocampus Middle brain
37 chr3:179444600-179449000 Weak transcription Aorta Aorta
38 chr3:179444600-179451400 Weak transcription Esophagus oesophagus
39 chr3:179444600-179460000 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr3:179444600-179461800 Weak transcription Primary monocytes fromperipheralblood blood
41 chr3:179444800-179462600 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr3:179446000-179451400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr3:179446000-179452200 Weak transcription HMEC breast
44 chr3:179446600-179449400 Enhancers Skeletal Muscle Male skeletal muscle
45 chr3:179446600-179450800 Strong transcription Cortex derived primary cultured neurospheres brain
46 chr3:179446600-179451000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr3:179446600-179451400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr3:179446600-179451800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr3:179446600-179452200 Strong transcription Primary hematopoietic stem cells short term culture blood
50 chr3:179446800-179449400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015