Variant report

Variant	rs3213761
Chromosome Location	chr3:179448383-179448384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1025864	0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs11918373	0.82[YRI][hapmap]
rs1966758	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268934	0.82[YRI][hapmap]
rs2268937	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300765	0.82[YRI][hapmap]
rs2300768	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6443669	0.81[EUR][1000 genomes]
rs6775918	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6793670	0.84[EUR][1000 genomes]
rs9824503	0.82[YRI][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179385000-179448400	Weak transcription	Fetal Brain Male	brain
2	chr3:179391000-179452200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:179399000-179459800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:179406600-179449400	Weak transcription	Spleen	Spleen
6	chr3:179416200-179448400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:179420200-179478800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:179422800-179460600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:179423400-179448400	Weak transcription	Gastric	stomach
10	chr3:179424000-179474800	Weak transcription	Fetal Kidney	kidney
11	chr3:179424400-179487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:179425200-179448400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:179427000-179457600	Weak transcription	Thymus	Thymus
14	chr3:179427400-179449200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:179428800-179452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:179428800-179456800	Weak transcription	HUVEC	blood vessel
17	chr3:179428800-179460000	Weak transcription	Brain Substantia Nigra	brain
18	chr3:179429000-179466200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:179434400-179449200	Weak transcription	Fetal Heart	heart
20	chr3:179434400-179450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:179434600-179452200	Weak transcription	A549	lung
22	chr3:179435200-179449200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:179435400-179450600	Weak transcription	HSMMtube	muscle
24	chr3:179435600-179460000	Weak transcription	NHDF-Ad	bronchial
25	chr3:179436000-179459800	Weak transcription	Small Intestine	intestine
26	chr3:179436400-179448400	Weak transcription	NHLF	lung
27	chr3:179437400-179490200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:179438200-179452200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr3:179438400-179489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:179439600-179448400	Weak transcription	HSMM	muscle
32	chr3:179439600-179452200	Weak transcription	NHEK	skin
33	chr3:179439800-179452400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:179440000-179448400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:179440200-179448600	Weak transcription	Fetal Brain Female	brain
36	chr3:179440200-179448600	Weak transcription	NH-A	brain
37	chr3:179440800-179449400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:179441000-179448400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:179441000-179448800	Weak transcription	Fetal Intestine Small	intestine
40	chr3:179441000-179449000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:179441000-179449000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:179441000-179484200	Weak transcription	Colon Smooth Muscle	Colon
43	chr3:179441200-179460600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:179441400-179448400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:179441400-179448400	Weak transcription	Adipose Nuclei	Adipose
46	chr3:179441400-179459800	Weak transcription	Hela-S3	cervix
47	chr3:179444200-179449000	Weak transcription	Psoas Muscle	Psoas
48	chr3:179444200-179460000	Weak transcription	Pancreas	Pancrea
49	chr3:179444400-179448400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:179444400-179449200	Weak transcription	Brain Hippocampus Middle	brain

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