Variant report

Variant	rs1025864
Chromosome Location	chr3:179452888-179452889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2111391	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2268941	0.81[JPT][hapmap]
rs2268942	0.81[JPT][hapmap]
rs2300767	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3213761	0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs6443669	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6443670	0.80[ASN][1000 genomes]
rs6767552	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6771840	0.81[JPT][hapmap]
rs6785332	0.81[JPT][hapmap]
rs6793670	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759597	0.85[CHB][hapmap]
rs800369	0.81[ASN][1000 genomes]
rs9882786	0.85[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179399000-179459800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:179420200-179478800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:179422800-179460600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:179424000-179474800	Weak transcription	Fetal Kidney	kidney
6	chr3:179424400-179487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:179427000-179457600	Weak transcription	Thymus	Thymus
8	chr3:179428800-179456800	Weak transcription	HUVEC	blood vessel
9	chr3:179428800-179460000	Weak transcription	Brain Substantia Nigra	brain
10	chr3:179429000-179466200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:179435600-179460000	Weak transcription	NHDF-Ad	bronchial
12	chr3:179436000-179459800	Weak transcription	Small Intestine	intestine
13	chr3:179437400-179490200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:179438400-179489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:179441000-179484200	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:179441200-179460600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:179441400-179459800	Weak transcription	Hela-S3	cervix
19	chr3:179444200-179460000	Weak transcription	Pancreas	Pancrea
20	chr3:179444600-179460000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:179444600-179461800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:179444800-179462600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:179446800-179465600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:179446800-179466400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:179447000-179465600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:179448800-179459600	Weak transcription	HSMM	muscle
27	chr3:179448800-179460000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:179449000-179457000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:179449000-179460000	Weak transcription	Fetal Thymus	thymus
30	chr3:179449400-179460000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:179449600-179460000	Weak transcription	Brain Anterior Caudate	brain
33	chr3:179449600-179460200	Weak transcription	NH-A	brain
34	chr3:179449800-179458000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:179449800-179460200	Weak transcription	Gastric	stomach
36	chr3:179450000-179459000	Weak transcription	Brain Angular Gyrus	brain
37	chr3:179450000-179460000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr3:179450000-179460000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:179450000-179478400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:179450000-179484200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:179450000-179487200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:179450200-179457600	Weak transcription	Right Ventricle	heart
43	chr3:179450200-179462400	Weak transcription	Spleen	Spleen
44	chr3:179450400-179453200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr3:179450400-179455800	Weak transcription	Fetal Brain Female	brain
46	chr3:179450400-179459400	Weak transcription	GM12878-XiMat	blood
47	chr3:179450400-179459800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:179450400-179460000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr3:179450400-179460000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr3:179450400-179474000	Weak transcription	Placenta	Placenta

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