Variant report

Variant	rs759597
Chromosome Location	chr3:179498685-179498686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179495986..179498863-chr3:179502747..179504649,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1025864	0.85[CHB][hapmap]
rs1442496	0.89[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1990739	0.89[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2111391	0.85[CHB][hapmap]
rs2300767	0.85[CHB][hapmap]
rs2339847	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6767552	0.85[CHB][hapmap]
rs6800017	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6809820	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[GIH][hapmap];0.82[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap]
rs9757502	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9869557	0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881656	1.00[ASW][hapmap];0.89[CEU][hapmap];0.86[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs759597	DVL3	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:179453200-179507600	Weak transcription	NHEK	skin
5	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
7	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
8	chr3:179476200-179512200	Weak transcription	Gastric	stomach
9	chr3:179479000-179502600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
11	chr3:179479200-179499400	Weak transcription	Thymus	Thymus
12	chr3:179479200-179500800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:179484600-179500000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:179484600-179504400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:179485000-179502000	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:179485000-179504600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:179485000-179505000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
20	chr3:179485200-179499200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:179485200-179500200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:179485400-179505400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:179485400-179508800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:179485600-179503400	Weak transcription	Right Ventricle	heart
27	chr3:179485800-179505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:179486200-179499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr3:179486200-179500000	Weak transcription	Brain Angular Gyrus	brain
30	chr3:179486400-179499400	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:179486400-179499400	Weak transcription	NH-A	brain
32	chr3:179486400-179504400	Weak transcription	HSMMtube	muscle
33	chr3:179486400-179508800	Weak transcription	A549	lung
34	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
35	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
36	chr3:179486800-179499400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:179488200-179502000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:179488800-179504000	Strong transcription	Dnd41	blood
39	chr3:179488800-179510800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:179489600-179499800	Weak transcription	Stomach Mucosa	stomach
41	chr3:179489600-179506200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
43	chr3:179489800-179499600	Weak transcription	HSMM	muscle
44	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
45	chr3:179492400-179499200	Weak transcription	HUVEC	blood vessel
46	chr3:179492400-179499600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:179492400-179518800	Weak transcription	Osteobl	bone
48	chr3:179492600-179499600	Weak transcription	GM12878-XiMat	blood
49	chr3:179493000-179503400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:179493600-179499200	Weak transcription	Fetal Muscle Leg	muscle

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