Variant report

Variant	rs1442496
Chromosome Location	chr3:179522312-179522313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1990739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111397	1.00[CHB][hapmap]
rs2339847	0.81[AFR][1000 genomes]
rs6800017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs759597	0.89[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9757502	0.85[AFR][1000 genomes]
rs9869557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9881656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
2	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:179498400-179528800	Weak transcription	Fetal Brain Male	brain
4	chr3:179500000-179524800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:179500400-179525200	Weak transcription	Brain Angular Gyrus	brain
6	chr3:179504000-179534800	Weak transcription	Fetal Brain Female	brain
7	chr3:179504000-179537400	Weak transcription	Brain Germinal Matrix	brain
8	chr3:179514800-179526200	Weak transcription	Thymus	Thymus
9	chr3:179517400-179530000	Strong transcription	Dnd41	blood
10	chr3:179518000-179525200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:179519400-179524800	Weak transcription	Brain Substantia Nigra	brain
12	chr3:179519600-179523400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:179519800-179523800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:179519800-179524000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:179519800-179524000	Weak transcription	HSMMtube	muscle
16	chr3:179519800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:179519800-179528600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:179519800-179528600	Weak transcription	HSMM	muscle
19	chr3:179519800-179528800	Weak transcription	NHDF-Ad	bronchial
20	chr3:179519800-179529200	Weak transcription	HMEC	breast
21	chr3:179519800-179529600	Weak transcription	NHLF	lung
22	chr3:179520000-179524000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:179520000-179524000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:179520000-179524000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:179520200-179529000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:179521000-179522400	Enhancers	Primary T cells from cord blood	blood
27	chr3:179521200-179522400	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr3:179521200-179523600	Strong transcription	Brain Cingulate Gyrus	brain
29	chr3:179521400-179525200	Weak transcription	Pancreas	Pancrea

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