Variant report

Variant	rs6809820
Chromosome Location	chr3:179530595-179530596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1442496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1990739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2111397	1.00[CHB][hapmap]
rs6800017	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.84[MKK][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs759597	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[GIH][hapmap];0.82[LWK][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap]
rs9869557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9881656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179504000-179534800	Weak transcription	Fetal Brain Female	brain
2	chr3:179504000-179537400	Weak transcription	Brain Germinal Matrix	brain
3	chr3:179529400-179539000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:179529600-179532000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:179529600-179532200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:179529800-179530800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:179529800-179532200	Weak transcription	Brain Substantia Nigra	brain
8	chr3:179529800-179537200	Weak transcription	Brain Anterior Caudate	brain
9	chr3:179529800-179537200	Weak transcription	Pancreas	Pancrea
10	chr3:179530000-179530600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:179530000-179532000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:179530000-179532000	Weak transcription	Dnd41	blood
13	chr3:179530000-179532200	Weak transcription	Brain Angular Gyrus	brain
14	chr3:179530400-179530600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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