Variant report

Variant	rs9869557
Chromosome Location	chr3:179514386-179514387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179513588..179515702-chr3:179541436..179543921,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRPL47-5	chr3:179512750-179515908	NONHSAT093420

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1442496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1990739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2111397	1.00[CHB][hapmap]
rs6800017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6809820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs759597	0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
3	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
6	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
7	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:179492400-179518800	Weak transcription	Osteobl	bone
9	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:179494200-179517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:179498400-179528800	Weak transcription	Fetal Brain Male	brain
12	chr3:179500000-179514400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:179500000-179524800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:179500400-179525200	Weak transcription	Brain Angular Gyrus	brain
15	chr3:179500600-179519000	Weak transcription	HSMM	muscle
16	chr3:179502000-179518400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:179503200-179518600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:179503800-179514400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:179503800-179518600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:179504000-179514400	Weak transcription	HepG2	liver
21	chr3:179504000-179517400	Weak transcription	Dnd41	blood
22	chr3:179504000-179518200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:179504000-179518800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:179504000-179534800	Weak transcription	Fetal Brain Female	brain
25	chr3:179504000-179537400	Weak transcription	Brain Germinal Matrix	brain
26	chr3:179507000-179517200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:179507600-179517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:179508000-179514600	Weak transcription	Fetal Stomach	stomach
29	chr3:179508000-179518400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:179508200-179519600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:179512000-179515200	Enhancers	Primary T cells from cord blood	blood
32	chr3:179512600-179517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:179513800-179514800	Enhancers	Thymus	Thymus
34	chr3:179514200-179515000	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links