Variant report

Variant	rs2270206
Chromosome Location	chr7:116913567-116913568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10235008	0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10241082	0.86[AFR][1000 genomes]
rs10247427	0.84[AFR][1000 genomes]
rs10262178	0.86[AFR][1000 genomes]
rs10272540	0.89[AFR][1000 genomes]
rs10953837	0.89[AFR][1000 genomes]
rs10953838	0.89[AFR][1000 genomes]
rs11763514	0.89[AFR][1000 genomes]
rs2106894	0.89[AFR][1000 genomes]
rs4263680	0.89[AFR][1000 genomes]
rs4403349	0.87[AFR][1000 genomes]
rs55712256	0.86[AFR][1000 genomes]
rs57237256	0.85[AFR][1000 genomes]
rs59383324	0.89[AFR][1000 genomes]
rs59522753	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs718737	0.89[AFR][1000 genomes]
rs73211959	0.87[AFR][1000 genomes]
rs7786419	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9918524	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:116910800-116915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:116911000-116913600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:116911200-116913600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:116911200-116915000	Weak transcription	NHLF	lung
6	chr7:116912000-116915000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:116912200-116915200	Weak transcription	Osteobl	bone
8	chr7:116912400-116914800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:116913000-116915000	Weak transcription	NHDF-Ad	bronchial
10	chr7:116913200-116913600	Enhancers	Fetal Kidney	kidney
11	chr7:116913200-116913800	Enhancers	NHEK	skin
12	chr7:116913200-116915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:116913200-116915200	Enhancers	HMEC	breast
14	chr7:116913400-116913800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:116913400-116914400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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