Variant report

Variant	rs7786419
Chromosome Location	chr7:116909300-116909301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr7:116909122-116910570	SK-N-SH	brain:	n/a	chr7:116910019-116910036 chr7:116910020-116910036
2	STAT3	chr7:116909138-116910903	MCF10A-Er-Src	breast:	n/a	chr7:116909214-116909221
3	POLR2A	chr7:116909284-116909988	HUVEC	blood vessel:	n/a	n/a
4	JUND	chr7:116909073-116910461	SK-N-SH	brain:	n/a	chr7:116910072-116910084
5	GATA3	chr7:116909154-116909345	SH-SY5Y	brain:	n/a	n/a
6	GATA3	chr7:116909199-116911070	SK-N-SH	brain:	n/a	chr7:116910863-116910870 chr7:116910863-116910870 chr7:116910219-116910229 chr7:116910863-116910870 chr7:116910219-116910226
7	MAX	chr7:116909296-116909922	SK-N-SH	brain:	n/a	n/a
8	JUND	chr7:116909170-116911121	SK-N-SH	brain:	n/a	chr7:116910072-116910084
9	TCF12	chr7:116909210-116910947	SK-N-SH	brain:	n/a	n/a
10	EP300	chr7:116909250-116910794	SK-N-SH	brain:	n/a	n/a
11	TEAD4	chr7:116909280-116910223	SK-N-SH	brain:	n/a	n/a
12	FOSL2	chr7:116909216-116910756	SK-N-SH	brain:	n/a	chr7:116910072-116910084
13	JUND	chr7:116909206-116910317	SK-N-SH	brain:	n/a	chr7:116910072-116910084
14	TCF12	chr7:116909247-116910818	SK-N-SH	brain:	n/a	n/a
15	FOS	chr7:116909253-116910260	HUVEC	blood vessel:	n/a	chr7:116909632-116909643 chr7:116910072-116910084
16	MAX	chr7:116909293-116909933	A549	lung:	n/a	n/a
17	PBX3	chr7:116909255-116910859	SK-N-SH	brain:	n/a	n/a
18	FOSL2	chr7:116909236-116910387	A549	lung:	n/a	chr7:116910072-116910084
19	STAT3	chr7:116909282-116910371	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr7:116909178-116909661	MCF10A-Er-Src	breast:	n/a	n/a
21	GATA3	chr7:116909216-116910535	SK-N-SH	brain:	n/a	chr7:116910219-116910229 chr7:116910219-116910226
22	EP300	chr7:116909264-116910187	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:116899094..116902058-chr7:116908237..116910049,2	MCF-7	breast:
2	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
3	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000230785	TF binding region
ENSG00000230605	TF binding region
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10235008	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10241082	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10247427	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10247822	0.84[AMR][1000 genomes]
rs10262178	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10272540	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953837	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953838	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11763514	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2106894	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2270206	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28743073	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs38905	0.85[ASN][1000 genomes]
rs38906	0.82[ASN][1000 genomes]
rs38907	0.85[ASN][1000 genomes]
rs38908	0.85[ASN][1000 genomes]
rs38910	0.85[ASN][1000 genomes]
rs38911	0.88[ASN][1000 genomes]
rs4263680	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4282508	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4403349	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4587271	0.81[AMR][1000 genomes]
rs4612282	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632997	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55712256	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56863440	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57237256	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59383324	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59522753	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66547623	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs718736	0.83[AFR][1000 genomes]
rs718737	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73211959	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9656249	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9918524	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9918727	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909000-116911000	Enhancers	HMEC	breast
2	chr7:116909200-116909400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:116909200-116909400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:116909200-116909400	Enhancers	HSMM	muscle
5	chr7:116909200-116909400	Enhancers	NHDF-Ad	bronchial
6	chr7:116909200-116909400	Enhancers	NHEK	skin
7	chr7:116909200-116909400	Enhancers	Osteobl	bone
8	chr7:116909200-116909600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr7:116909200-116909600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr7:116909200-116909600	Enhancers	Hela-S3	cervix
11	chr7:116909200-116909800	Enhancers	NHLF	lung
12	chr7:116909200-116910000	Flanking Active TSS	NH-A	brain
13	chr7:116909200-116910800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:116909200-116910800	Enhancers	HUVEC	blood vessel
15	chr7:116909200-116911000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:116909200-116911200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:116909200-116911200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:116909200-116912000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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