Variant report
| Variant | rs718736 |
|---|---|
| Chromosome Location | chr7:116883524-116883525 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000004866 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10235008 | 0.81[AFR][1000 genomes] |
| rs10241082 | 0.94[CHB][hapmap];0.88[AFR][1000 genomes] |
| rs10247427 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10262178 | 0.94[CHB][hapmap];0.88[AFR][1000 genomes] |
| rs10272540 | 0.88[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10953837 | 0.88[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10953838 | 0.88[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11763514 | 0.88[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2106894 | 0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28743073 | 0.82[ASN][1000 genomes] |
| rs38905 | 0.94[CHB][hapmap] |
| rs38911 | 0.94[CHB][hapmap] |
| rs4263680 | 0.88[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4403349 | 0.94[CHB][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4612282 | 0.94[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs55712256 | 0.88[AFR][1000 genomes] |
| rs57237256 | 0.87[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs59383324 | 0.88[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59522753 | 0.80[AFR][1000 genomes] |
| rs66547623 | 0.81[ASN][1000 genomes] |
| rs718737 | 0.94[CHB][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73211959 | 0.87[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7786419 | 0.83[AFR][1000 genomes] |
| rs9918524 | 0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9918727 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831108 | chr7:116749534-116952011 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:116882800-116884000 | Enhancers | HSMMtube | muscle |
