Variant report

Variant	rs10247427
Chromosome Location	chr7:116879607-116879608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10235008	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10241082	1.00[ASW][hapmap];0.86[GIH][hapmap];0.84[LWK][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10247822	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10262178	0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10272540	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10953837	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10953838	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11763514	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2106894	0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2270206	0.84[AFR][1000 genomes]
rs28743073	0.84[AMR][1000 genomes]
rs4263680	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4403349	0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4612282	0.84[GIH][hapmap];0.85[MKK][hapmap]
rs55712256	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57237256	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59383324	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59522753	0.82[AFR][1000 genomes]
rs718736	0.81[CHB][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs718737	0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73211959	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7786419	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9918524	0.82[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9918727	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116878800-116879800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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