Variant report

Variant	rs2270703
Chromosome Location	chr1:214560293-214560294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17022806	0.81[ASN][1000 genomes]
rs4565681	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61821363	0.85[EUR][1000 genomes]
rs61821365	0.87[EUR][1000 genomes]
rs61821367	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61821368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677193	0.92[EUR][1000 genomes]
rs72757972	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:214529400-214561800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
6	chr1:214539600-214561600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:214541600-214566600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:214543600-214561600	Weak transcription	Colonic Mucosa	Colon
9	chr1:214546200-214576000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:214546200-214576200	Weak transcription	Right Atrium	heart
11	chr1:214547800-214576200	Weak transcription	Fetal Heart	heart
12	chr1:214549000-214560800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:214549400-214561400	Strong transcription	Fetal Stomach	stomach
14	chr1:214550800-214560400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr1:214553200-214562400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:214554000-214562200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:214554000-214568200	Weak transcription	Liver	Liver
18	chr1:214554000-214577800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:214554200-214577800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:214554600-214561200	Strong transcription	Placenta	Placenta
21	chr1:214554600-214561600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:214554800-214561400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:214555000-214562400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:214555200-214561000	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr1:214555600-214561600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:214555800-214560400	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:214556000-214576000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:214556200-214560400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:214556200-214560400	Strong transcription	NHLF	lung
30	chr1:214556200-214561400	Strong transcription	Adipose Nuclei	Adipose
31	chr1:214556200-214561400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:214556800-214573400	Weak transcription	Fetal Kidney	kidney
33	chr1:214557600-214568600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:214557800-214563600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:214557800-214566600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:214557800-214576200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:214557800-214578000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:214557800-214589000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:214558000-214560600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr1:214558000-214562200	Weak transcription	Colon Smooth Muscle	Colon
41	chr1:214558000-214564000	Weak transcription	Esophagus	oesophagus
42	chr1:214558000-214564000	Weak transcription	Ovary	ovary
43	chr1:214558000-214565400	Weak transcription	Aorta	Aorta
44	chr1:214558000-214565800	Weak transcription	A549	lung
45	chr1:214558000-214566000	Weak transcription	Lung	lung
46	chr1:214558000-214566000	Weak transcription	Spleen	Spleen
47	chr1:214558000-214566200	Weak transcription	HepG2	liver
48	chr1:214558000-214567200	Weak transcription	Fetal Lung	lung
49	chr1:214558000-214576600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr1:214558000-214578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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