The 2.0 version of rSNPBase

Variant report

Variant rs61821363
Chromosome Location chr1:214526427-214526428
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
2 chr1:214503200-214537800 Weak transcription Gastric stomach
3 chr1:214504600-214533200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:214507000-214529800 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:214508400-214529600 Weak transcription Pancreas Pancrea
6 chr1:214508400-214535000 Weak transcription Esophagus oesophagus
7 chr1:214508800-214528600 Weak transcription Fetal Intestine Large intestine
8 chr1:214511400-214529400 Weak transcription Aorta Aorta
9 chr1:214511400-214530400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:214511400-214531200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:214511600-214528000 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:214511800-214528000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr1:214512000-214537000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr1:214514000-214537800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
17 chr1:214518400-214537800 Weak transcription Fetal Brain Male brain
18 chr1:214518600-214529000 Weak transcription Ovary ovary
19 chr1:214518800-214528800 Weak transcription Fetal Kidney kidney
20 chr1:214519000-214528600 Weak transcription Fetal Lung lung
21 chr1:214519000-214533800 Weak transcription Duodenum Mucosa Duodenum
22 chr1:214519000-214557800 Weak transcription Dnd41 blood
23 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
24 chr1:214520400-214526800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:214520400-214526800 Weak transcription Fetal Muscle Leg muscle
26 chr1:214520400-214529400 Weak transcription Fetal Intestine Small intestine
27 chr1:214521200-214537600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:214521600-214531000 Weak transcription Hela-S3 cervix
29 chr1:214521800-214528800 Weak transcription Placenta Placenta
30 chr1:214522000-214526800 Weak transcription NHLF lung
31 chr1:214522800-214526800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:214523400-214526800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr1:214523400-214530000 Weak transcription Colon Smooth Muscle Colon
35 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr1:214523600-214526800 Enhancers HSMMtube muscle
37 chr1:214523600-214528200 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr1:214523600-214529000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:214523800-214526800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:214523800-214526800 Weak transcription A549 lung
41 chr1:214523800-214527800 Weak transcription H9 Cell Line embryonic stem cell
42 chr1:214523800-214527800 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr1:214523800-214527800 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr1:214523800-214528000 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr1:214523800-214529400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr1:214523800-214529600 Weak transcription Placenta Amnion Placenta Amnion
47 chr1:214524200-214527800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:214524400-214535400 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
50 chr1:214524600-214526600 Enhancers Fetal Heart heart

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Last update: Aug 31, 2015