Variant report

Variant	rs9429919
Chromosome Location	chr1:214526332-214526333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214518586..214520229-chr1:214524475..214526426,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10157166	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11120300	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs17730380	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57810551	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61821363	0.83[ASN][1000 genomes]
rs6677193	1.00[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs6683913	1.00[CHB][hapmap]
rs7538203	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7552475	1.00[CHB][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:214503200-214537800	Weak transcription	Gastric	stomach
3	chr1:214504600-214533200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:214507000-214529800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:214508400-214529600	Weak transcription	Pancreas	Pancrea
6	chr1:214508400-214535000	Weak transcription	Esophagus	oesophagus
7	chr1:214508800-214528600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:214511400-214529400	Weak transcription	Aorta	Aorta
9	chr1:214511400-214530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:214511400-214531200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:214511600-214528000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:214511800-214528000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:214512000-214537000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr1:214514000-214537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:214514800-214526400	Weak transcription	Fetal Stomach	stomach
17	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
18	chr1:214518400-214537800	Weak transcription	Fetal Brain Male	brain
19	chr1:214518600-214529000	Weak transcription	Ovary	ovary
20	chr1:214518800-214528800	Weak transcription	Fetal Kidney	kidney
21	chr1:214519000-214528600	Weak transcription	Fetal Lung	lung
22	chr1:214519000-214533800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:214519000-214557800	Weak transcription	Dnd41	blood
24	chr1:214519200-214526400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:214520400-214526800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:214520400-214526800	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:214520400-214529400	Weak transcription	Fetal Intestine Small	intestine
29	chr1:214521200-214537600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:214521600-214531000	Weak transcription	Hela-S3	cervix
31	chr1:214521800-214528800	Weak transcription	Placenta	Placenta
32	chr1:214522000-214526800	Weak transcription	NHLF	lung
33	chr1:214522800-214526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:214522800-214552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:214523400-214526400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:214523400-214526800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:214523400-214530000	Weak transcription	Colon Smooth Muscle	Colon
38	chr1:214523400-214540800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:214523600-214526800	Enhancers	HSMMtube	muscle
40	chr1:214523600-214528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:214523600-214529000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:214523800-214526800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:214523800-214526800	Weak transcription	A549	lung
44	chr1:214523800-214527800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:214523800-214527800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:214523800-214527800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:214523800-214528000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr1:214523800-214529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:214523800-214529600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr1:214524200-214527800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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