The 2.0 version of rSNPBase

Variant report

Variant rs6677193
Chromosome Location chr1:214534654-214534655
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214503200-214537800 Weak transcription Gastric stomach
2 chr1:214508400-214535000 Weak transcription Esophagus oesophagus
3 chr1:214512000-214537000 Weak transcription Rectal Smooth Muscle rectum
4 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:214514000-214537800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
7 chr1:214518400-214537800 Weak transcription Fetal Brain Male brain
8 chr1:214519000-214557800 Weak transcription Dnd41 blood
9 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
10 chr1:214521200-214537600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:214524400-214535400 Strong transcription Breast Myoepithelial Primary Cells Breast
14 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
15 chr1:214524800-214534800 Strong transcription Muscle Satellite Cultured Cells --
16 chr1:214524800-214535200 Strong transcription NH-A brain
17 chr1:214524800-214535400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:214524800-214537800 Strong transcription NHEK skin
19 chr1:214524800-214539200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:214525000-214534800 Strong transcription HSMM muscle
21 chr1:214525000-214535600 Strong transcription NHDF-Ad bronchial
22 chr1:214525000-214537000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:214525600-214540000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:214526000-214538600 Strong transcription Stomach Smooth Muscle stomach
25 chr1:214526000-214544600 Weak transcription Spleen Spleen
26 chr1:214526400-214537200 Strong transcription Fetal Muscle Trunk muscle
27 chr1:214526400-214542400 Strong transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:214526600-214535000 Weak transcription Fetal Heart heart
29 chr1:214526800-214535400 Strong transcription Fetal Muscle Leg muscle
30 chr1:214527000-214535000 Strong transcription Osteobl bone
31 chr1:214527400-214540600 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr1:214527800-214542400 Weak transcription HepG2 liver
33 chr1:214528400-214535600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:214528600-214539800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:214528600-214552800 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:214528600-214555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:214528800-214537200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:214528800-214538800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:214528800-214539200 Strong transcription HUES6 Cell Line embryonic stem cell
40 chr1:214528800-214551800 Strong transcription HUES64 Cell Line embryonic stem cell
41 chr1:214529000-214535000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:214529000-214538400 Strong transcription HUES48 Cell Line embryonic stem cell
43 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
44 chr1:214529200-214535000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:214529200-214539600 Strong transcription Fetal Stomach stomach
46 chr1:214529400-214537000 Weak transcription Fetal Kidney kidney
47 chr1:214529400-214561800 Weak transcription Brain Angular Gyrus brain
48 chr1:214529600-214537800 Strong transcription Placenta Amnion Placenta Amnion
49 chr1:214529600-214544600 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:214529800-214534800 Weak transcription A549 lung

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015