Variant report

Variant	rs2273724
Chromosome Location	chr9:27185249-27185250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10757641	0.81[JPT][hapmap]
rs1319528	0.83[AMR][1000 genomes]
rs13286917	0.83[AMR][1000 genomes]
rs13295206	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13298110	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2273722	0.86[CHB][hapmap];0.86[AMR][1000 genomes]
rs2273723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3117638	0.81[ASN][1000 genomes]
rs34416950	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35275206	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35417610	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs578327	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs590894	0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs633903	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv6512	chr9:27155677-27200455	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892864	chr9:27176554-27296705	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv466335	chr9:27179244-27234029	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv613946	chr9:27179244-27234029	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27165400-27198200	Weak transcription	Ovary	ovary
3	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:27166200-27192200	Weak transcription	Fetal Stomach	stomach
5	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:27178400-27197200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:27179600-27191800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:27180800-27191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:27180800-27230600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:27182200-27192400	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:27182400-27192200	Weak transcription	Aorta	Aorta
13	chr9:27182400-27192200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:27182600-27194000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:27182800-27187800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:27184000-27190400	Weak transcription	Left Ventricle	heart
17	chr9:27184000-27192200	Weak transcription	Adipose Nuclei	Adipose
18	chr9:27184000-27197800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:27184200-27185600	Enhancers	Hela-S3	cervix
20	chr9:27184200-27186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:27184200-27186000	Enhancers	HUVEC	blood vessel
22	chr9:27184200-27186400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:27184200-27192600	Weak transcription	Lung	lung
24	chr9:27184200-27193800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:27184200-27194000	Weak transcription	Psoas Muscle	Psoas
26	chr9:27184200-27212600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:27184400-27191000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:27184600-27188800	Weak transcription	Gastric	stomach
29	chr9:27184800-27185400	Enhancers	Stomach Mucosa	stomach
30	chr9:27185000-27185600	Enhancers	Fetal Lung	lung

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