Variant report

Variant	rs2274552
Chromosome Location	chr6:167169098-167169099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4710090	0.84[TSI][hapmap]
rs7740362	0.91[CEU][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9459739	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167164200-167170400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:167164400-167170800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:167164800-167171000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:167165000-167170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:167165000-167171600	Weak transcription	Gastric	stomach
6	chr6:167165600-167171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:167165800-167170800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:167166600-167170400	Weak transcription	Thymus	Thymus
9	chr6:167166600-167170800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:167166800-167170000	Weak transcription	Fetal Thymus	thymus
11	chr6:167166800-167170400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:167166800-167170600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:167167000-167169400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr6:167167000-167169800	Weak transcription	NH-A	brain
15	chr6:167167400-167169200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:167167400-167169200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:167167800-167170600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:167168200-167170800	Weak transcription	Spleen	Spleen
19	chr6:167168400-167169400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
20	chr6:167168400-167170400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:167168400-167170600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:167168600-167170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:167168800-167169200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:167168800-167170600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:167168800-167170800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:167168800-167170800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:167168800-167180400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:167169000-167169200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:167169000-167169200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr6:167169000-167169400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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