Variant report

Variant	rs4710090
Chromosome Location	chr6:167164571-167164572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167160489..167162374-chr6:167163032..167165986,2	K562	blood:
2	chr6:167039628..167041364-chr6:167163244..167165367,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071242	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1883361	0.81[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs2274552	0.84[TSI][hapmap]
rs6914826	0.88[ASN][1000 genomes]
rs7740362	0.83[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9295368	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9347152	0.88[ASN][1000 genomes]
rs9459739	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv1792808	chr6:167155187-167164571	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1801953	chr6:167161571-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv605266	chr6:167161571-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1798769	chr6:167161571-167165786	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv605267	chr6:167161571-167165786	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv605278	chr6:167162077-167164571	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv605279	chr6:167162077-167165786	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1801282	chr6:167162181-167164571	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1834187	chr6:167162181-167164571	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv605294	chr6:167162181-167164571	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv605318	chr6:167162704-167165786	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167160000-167164600	Weak transcription	HSMMtube	muscle
2	chr6:167161600-167164600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:167163000-167164800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:167163000-167165200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:167163000-167165600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:167163200-167165000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:167163200-167165200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:167163200-167165600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:167163200-167165800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:167163200-167166800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:167163400-167164600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr6:167163400-167164600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:167163400-167164600	Enhancers	Thymus	Thymus
14	chr6:167163400-167165000	Enhancers	Gastric	stomach
15	chr6:167163400-167165000	Enhancers	NH-A	brain
16	chr6:167163400-167165200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:167163600-167164600	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:167163600-167165400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:167163800-167164600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:167163800-167165000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr6:167163800-167165000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:167164000-167164600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr6:167164000-167164600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:167164000-167165000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr6:167164000-167165200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:167164000-167165400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:167164200-167164600	Enhancers	Fetal Kidney	kidney
28	chr6:167164200-167164600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr6:167164200-167164800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:167164200-167164800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr6:167164200-167164800	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr6:167164200-167164800	Enhancers	GM12878-XiMat	blood
33	chr6:167164200-167165000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:167164200-167165000	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr6:167164200-167165000	Enhancers	HSMM	muscle
36	chr6:167164200-167167800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:167164200-167170400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:167164400-167164600	Bivalent Enhancer	Dnd41	blood
39	chr6:167164400-167164800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr6:167164400-167164800	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr6:167164400-167165000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr6:167164400-167165000	Flanking Active TSS	Fetal Thymus	thymus
43	chr6:167164400-167165200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:167164400-167165200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:167164400-167165200	Enhancers	Fetal Heart	heart
46	chr6:167164400-167165400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr6:167164400-167167800	Weak transcription	Spleen	Spleen
48	chr6:167164400-167170800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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