Variant report

Variant	rs9459739
Chromosome Location	chr6:167165631-167165632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167160489..167162374-chr6:167163032..167165986,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1883361	0.91[ASN][1000 genomes]
rs2274552	0.95[EUR][1000 genomes]
rs4710090	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6914826	0.91[ASN][1000 genomes]
rs7740362	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295368	0.99[ASN][1000 genomes]
rs9347152	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv1798769	chr6:167161571-167165786	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv605267	chr6:167161571-167165786	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv605279	chr6:167162077-167165786	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv605318	chr6:167162704-167165786	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167163200-167165800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:167163200-167166800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:167164200-167167800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:167164200-167170400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:167164400-167167800	Weak transcription	Spleen	Spleen
6	chr6:167164400-167170800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:167164600-167169000	Weak transcription	Fetal Kidney	kidney
8	chr6:167164800-167171000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:167165000-167165800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:167165000-167165800	Enhancers	GM12878-XiMat	blood
11	chr6:167165000-167166000	Weak transcription	Primary T cells from cord blood	blood
12	chr6:167165000-167166400	Enhancers	Primary B cells from cord blood	blood
13	chr6:167165000-167166400	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:167165000-167166600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:167165000-167166600	Enhancers	Thymus	Thymus
16	chr6:167165000-167166800	Enhancers	Fetal Thymus	thymus
17	chr6:167165000-167166800	Weak transcription	NH-A	brain
18	chr6:167165000-167167400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:167165000-167170800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:167165000-167171600	Weak transcription	Gastric	stomach
21	chr6:167165200-167167200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:167165200-167167600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:167165200-167167600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:167165200-167167800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:167165400-167167200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:167165400-167167400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:167165400-167167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:167165600-167166400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:167165600-167166600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:167165600-167167400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:167165600-167171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links