Variant report

Variant	rs2275276
Chromosome Location	chr1:45973928-45973929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:112)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:112 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr1:45973568-45975082	GM12878	blood:	n/a	n/a
2	FOSL2	chr1:45973875-45974962	HepG2	liver:	n/a	n/a
3	JUND	chr1:45972871-45975112	A549	lung:	n/a	chr1:45973476-45973490
4	POLR2A	chr1:45972866-45975153	HCT-116	colon:	n/a	n/a
5	JUND	chr1:45973695-45975056	HCT-116	colon:	n/a	n/a
6	POLR2A	chr1:45973385-45974853	U87	brain:	n/a	n/a
7	POLR2A	chr1:45973845-45974852	GM12892	blood:	n/a	n/a
8	POLR2A	chr1:45973000-45974988	GM12878	blood:	n/a	n/a
9	MYBL2	chr1:45973697-45974397	HepG2	liver:	n/a	n/a
10	POLR2A	chr1:45972808-45975056	H1-hESC	embryonic stem cell:	n/a	n/a
11	RXRA	chr1:45973607-45973942	HepG2	liver:	n/a	n/a
12	POLR2A	chr1:45973723-45974934	GM12878	blood:	n/a	n/a
13	FOXA2	chr1:45973752-45974248	A549	lung:	n/a	n/a
14	FOXA1	chr1:45973548-45974343	HepG2	liver:	n/a	n/a
15	SIX5	chr1:45973129-45974123	A549	lung:	n/a	chr1:45973328-45973344 chr1:45973328-45973344 chr1:45973328-45973344 chr1:45973328-45973344 chr1:45973328-45973344 chr1:45973328-45973344
16	POLR2A	chr1:45972877-45974916	A549	lung:	n/a	n/a
17	REST	chr1:45973431-45974663	A549	lung:	n/a	n/a
18	POLR2A	chr1:45972838-45975218	PANC-1	pancreas:	n/a	n/a
19	JUND	chr1:45972476-45975008	A549	lung:	n/a	chr1:45973476-45973490
20	POLR2A	chr1:45973274-45974958	U87	brain:	n/a	n/a
21	PML	chr1:45973923-45975170	GM12878	blood:	n/a	n/a
22	POLR2A	chr1:45972867-45979125	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr1:45972932-45976748	GM12892	blood:	n/a	n/a
24	ZBTB33	chr1:45973418-45974227	A549	lung:	n/a	n/a
25	ELF1	chr1:45972954-45974760	A549	lung:	n/a	n/a
26	POLR2A	chr1:45973854-45974965	HUVEC	blood vessel:	n/a	n/a
27	POLR2A	chr1:45972796-45975088	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr1:45973724-45974879	A549	lung:	n/a	n/a
29	POLR2A	chr1:45973197-45975216	GM12891	blood:	n/a	n/a
30	POLR2A	chr1:45972821-45975013	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr1:45973208-45975384	K562	blood:	n/a	n/a
32	RCOR1	chr1:45973702-45974640	HepG2	liver:	n/a	n/a
33	POLR2A	chr1:45973399-45974958	U87	brain:	n/a	n/a
34	NFATC1	chr1:45973819-45974829	GM12878	blood:	n/a	n/a
35	POLR2A	chr1:45973915-45974860	GM19193	blood:	n/a	n/a
36	POLR2A	chr1:45972667-45975035	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr1:45972687-45978691	SK-N-MC	brain:	n/a	n/a
38	POLR2A	chr1:45973921-45975042	K562	blood:	n/a	n/a
39	SP1	chr1:45973859-45974398	A549	lung:	n/a	chr1:45974296-45974309
40	POLR2A	chr1:45972840-45975205	K562	blood:	n/a	n/a
41	POLR2A	chr1:45973577-45974973	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr1:45973017-45975225	GM12892	blood:	n/a	n/a
43	ATF3	chr1:45973345-45974842	A549	lung:	n/a	n/a
44	POLR2A	chr1:45973292-45977716	HepG2	liver:	n/a	n/a
45	TCF12	chr1:45972856-45974890	A549	lung:	n/a	chr1:45973677-45973684
46	FOXA2	chr1:45973582-45974272	HepG2	liver:	n/a	n/a
47	POLR2A	chr1:45973847-45974415	SK-N-MC	brain:	n/a	n/a
48	POLR2A	chr1:45973730-45974897	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr1:45972974-45979094	K562	blood:	n/a	n/a
50	POLR2A	chr1:45973506-45975087	HCT-116	colon:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:45972529..45974569-chr1:46033320..46036119,2	MCF-7	breast:
2	chr1:45972767..45974304-chr1:46039504..46041198,2	K562	blood:
3	chr1:45973068..45975148-chr1:46049390..46051110,2	MCF-7	breast:
4	chr1:45973182..45975128-chr1:45984664..45989019,3	MCF-7	breast:
5	chr1:45965671..45969478-chr1:45972057..45975317,5	MCF-7	breast:
6	chr1:45811184..45813641-chr1:45972187..45974707,2	K562	blood:
7	chr1:45972145..45974948-chr1:46590172..46592785,2	K562	blood:
8	chr1:45805983..45807549-chr1:45973532..45975768,2	K562	blood:
9	chr1:45972293..45974739-chr1:46350771..46352345,2	K562	blood:

No data

Variant related genes	Relation type
MMACHC	TF binding region
ENSG00000236624	Chromatin interaction
ENSG00000132773	Chromatin interaction
ENSG00000132763	Chromatin interaction
ENSG00000117448	Chromatin interaction
ENSG00000132781	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000132780	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10789463	0.83[CHB][hapmap];0.93[CHD][hapmap];0.83[TSI][hapmap]
rs10789465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789470	0.82[CHD][hapmap]
rs10890331	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10890333	0.80[CHD][hapmap]
rs11211109	0.90[ASN][1000 genomes]
rs11211122	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211129	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11211130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11211135	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211136	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11211157	0.80[CHD][hapmap]
rs11211163	0.80[CHD][hapmap]
rs11580609	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11582118	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12119202	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12133294	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12139364	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs1250	0.80[CHD][hapmap]
rs12568144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12729715	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12738318	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.91[ASN][1000 genomes]
rs12743512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1765709	0.82[ASN][1000 genomes]
rs1771551	0.83[CHB][hapmap]
rs2036021	0.86[ASN][1000 genomes]
rs2050376	0.80[CHD][hapmap]
rs2230658	0.80[CHD][hapmap]
rs2253862	0.80[CHD][hapmap]
rs2275085	0.80[CHD][hapmap]
rs2298018	0.83[CHB][hapmap]
rs2356413	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2356551	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2356553	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2453404	0.80[EUR][1000 genomes]
rs2492841	0.86[ASN][1000 genomes]
rs2934856	0.82[EUR][1000 genomes]
rs2934857	0.80[CHD][hapmap]
rs2934859	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2991970	0.85[EUR][1000 genomes]
rs2991971	0.81[EUR][1000 genomes]
rs2991972	1.00[CEU][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2991973	0.81[EUR][1000 genomes]
rs2991974	0.81[EUR][1000 genomes]
rs2991986	0.80[CHD][hapmap]
rs2993262	0.82[EUR][1000 genomes]
rs3014210	0.80[CHD][hapmap]
rs3014216	0.80[CHD][hapmap]
rs3014218	0.80[CHD][hapmap]
rs3014238	0.80[CHD][hapmap]
rs3014239	0.80[CHD][hapmap]
rs3014242	0.80[CHD][hapmap]
rs35092140	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3811436	0.80[CHD][hapmap]
rs4431884	0.80[CHD][hapmap]
rs4559551	0.80[CHD][hapmap]
rs4660312	0.80[CHD][hapmap]
rs4660859	0.86[ASN][1000 genomes]
rs4660861	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4660869	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4660876	0.82[EUR][1000 genomes]
rs4660882	0.80[CHD][hapmap]
rs5021934	0.80[CHD][hapmap]
rs512026	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs518365	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs523526	0.82[EUR][1000 genomes]
rs60608374	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs606542	0.81[EUR][1000 genomes]
rs622798	1.00[CEU][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs644915	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6661321	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs666720	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs667626	0.82[EUR][1000 genomes]
rs71500084	0.84[ASN][1000 genomes]
rs7526571	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7526665	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs781058	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs781226	0.83[CHB][hapmap]
rs781232	0.83[CHB][hapmap]
rs7903	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9147	0.82[EUR][1000 genomes]
rs937291	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9429079	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs945180	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs998199	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
4	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
5	nsv829726	chr1:45897581-46103186	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
6	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
7	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
8	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs2275276	CYP4Z2P	cis	cerebellum	SCAN
rs2275276	CCDC163P	cis	Heart Left Ventricle	GTEx
rs2275276	AKR1A1	cis	multi-tissue	Pritchard
rs2275276	CCDC163P	cis	Skin Sun Exposed Lower leg	GTEx
rs2275276	FOXD2	cis	parietal	SCAN
rs2275276	GPBP1L1	cis	Lymphoblastoid	GTEx
rs2275276	CCDC163P	cis	Esophagus Muscularis	GTEx
rs2275276	CCDC163P	cis	Esophagus Mucosa	GTEx
rs2275276	CCDC163P	cis	Stomach	GTEx
rs2275276	TESK2	cis	cerebellum	SCAN
rs2275276	TESK2	cis	lymphoblastoid	seeQTL
rs2275276	CCDC163P	cis	lung	GTEx
rs2275276	CCDC163P	cis	Nerve Tibial	GTEx
rs2275276	MUTYH	cis	multi-tissue	Pritchard
rs2275276	CCDC163P	cis	Artery Tibial	GTEx
rs2275276	CCDC163P	cis	Muscle Skeletal	GTEx
rs2275276	CCDC163P	cis	Artery Aorta	GTEx
rs2275276	CCDC163P	cis	Adipose Subcutaneous	GTEx
rs2275276	CCDC163P	cis	Thyroid	GTEx
rs2275276	CCDC163P	cis	Whole Blood	GTEx
rs2275276	IPP	cis	lymphoblastoid	seeQTL
rs2275276	MMACHC	cis	lymphoblastoid	seeQTL
rs2275276	C1orf84	cis	cerebellum	SCAN
rs2275276	Hs.396207	cis	multi-tissue	Pritchard
rs2275276	GPBP1L1	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45956800-45974000	Weak transcription	Small Intestine	intestine
2	chr1:45966400-45975600	Weak transcription	HSMMtube	muscle
3	chr1:45966400-45975800	Weak transcription	Aorta	Aorta
4	chr1:45966600-45984600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:45966800-45974200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:45966800-45975800	Weak transcription	HSMM	muscle
7	chr1:45966800-45975800	Weak transcription	NHDF-Ad	bronchial
8	chr1:45966800-45976000	Weak transcription	Fetal Brain Male	brain
9	chr1:45966800-45976000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:45966800-45980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:45966800-45984800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:45967000-45974000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:45967000-45974000	Weak transcription	Colonic Mucosa	Colon
14	chr1:45967000-45974000	Weak transcription	HUVEC	blood vessel
15	chr1:45967000-45974400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:45967000-45974400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:45967000-45974400	Weak transcription	Osteobl	bone
18	chr1:45967000-45975400	Weak transcription	NH-A	brain
19	chr1:45967000-45975600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:45967000-45975800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr1:45967000-45977200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr1:45967200-45974000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:45967200-45974000	Weak transcription	Placenta	Placenta
24	chr1:45967200-45975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:45967200-45975400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:45967200-45975400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:45967200-45975600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:45967200-45975600	Weak transcription	Psoas Muscle	Psoas
29	chr1:45967200-45975800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:45967200-45976200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr1:45967200-45976200	Weak transcription	Fetal Lung	lung
32	chr1:45967400-45974000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:45967400-45974200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:45967400-45974200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:45967400-45974200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:45967400-45974400	Weak transcription	Fetal Kidney	kidney
37	chr1:45967400-45975600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr1:45967400-45975800	Weak transcription	Stomach Mucosa	stomach
39	chr1:45967600-45974000	Weak transcription	Gastric	stomach
40	chr1:45967600-45974400	Weak transcription	Esophagus	oesophagus
41	chr1:45968200-45974200	Weak transcription	Pancreas	Pancrea
42	chr1:45971600-45985000	Strong transcription	Fetal Stomach	stomach
43	chr1:45971800-45974400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:45971800-45980400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:45971800-45982000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:45972800-45975000	Genic enhancers	HepG2	liver
47	chr1:45972800-45978200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:45972800-45978400	Strong transcription	Fetal Intestine Small	intestine
49	chr1:45972800-45980400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:45972800-45982200	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links