Variant report

Variant	rs937291
Chromosome Location	chr1:45957039-45957040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr1:45956562-45957218	ECC-1	luminal epithelium:	n/a	n/a
2	NR2F2	chr1:45956486-45957270	K562	blood:	n/a	n/a
3	USF1	chr1:45956785-45957220	A549	lung:	n/a	n/a
4	PBX3	chr1:45956704-45957301	A549	lung:	n/a	chr1:45957009-45957029 chr1:45957024-45957033
5	USF1	chr1:45956741-45957114	GM12878	blood:	n/a	n/a
6	MAX	chr1:45956783-45957148	K562	blood:	n/a	chr1:45956983-45956993 chr1:45956983-45956994 chr1:45956984-45956993 chr1:45956984-45956993 chr1:45956979-45956998 chr1:45956983-45956994 chr1:45956982-45956995 chr1:45956985-45956994 chr1:45956984-45956994 chr1:45956982-45956995 chr1:45956983-45956993 chr1:45956893-45956903 chr1:45956982-45956995 chr1:45956982-45956995 chr1:45956984-45956993
7	EBF1	chr1:45956813-45957211	GM12878	blood:	n/a	n/a
8	SIN3AK20	chr1:45956479-45957083	SK-N-SH	brain:	n/a	n/a
9	FOS	chr1:45956897-45957349	MCF10A-Er-Src	breast:	n/a	n/a
10	PAX5	chr1:45956695-45957228	GM12878	blood:	n/a	n/a
11	IRF3	chr1:45956902-45957295	HepG2	liver:	n/a	chr1:45957176-45957190
12	RELA	chr1:45955729-45957429	GM12891	blood:	n/a	n/a
13	HEY1	chr1:45956515-45957322	HepG2	liver:	n/a	n/a
14	KAP1	chr1:45956651-45957454	U2OS	brain:	n/a	n/a
15	TBL1XR1	chr1:45956553-45957437	GM12878	blood:	n/a	n/a
16	TCF12	chr1:45956666-45957263	GM12878	blood:	n/a	chr1:45957142-45957149
17	USF1	chr1:45956715-45957229	SK-N-SH_RA	brain:	n/a	n/a
18	TCF12	chr1:45956313-45957290	ECC-1	luminal epithelium:	n/a	chr1:45957142-45957149
19	PBX3	chr1:45956858-45957144	GM12878	blood:	n/a	chr1:45957009-45957029 chr1:45957024-45957033
20	FOS	chr1:45956833-45957400	MCF10A-Er-Src	breast:	n/a	n/a
21	STAT3	chr1:45956889-45957446	MCF10A-Er-Src	breast:	n/a	chr1:45957113-45957125 chr1:45957078-45957085
22	MYC	chr1:45956751-45957173	K562	blood:	n/a	chr1:45956983-45956993 chr1:45956983-45956994 chr1:45956984-45956993 chr1:45956984-45956993 chr1:45956979-45956998 chr1:45956983-45956994 chr1:45956982-45956995 chr1:45956985-45956994 chr1:45956984-45956994 chr1:45956982-45956995 chr1:45956983-45956993 chr1:45956893-45956903 chr1:45956982-45956995 chr1:45956982-45956995 chr1:45956984-45956993
23	USF2	chr1:45956798-45957184	Hela-S3	cervix:	n/a	chr1:45956982-45956993
24	ELF1	chr1:45956644-45957307	HepG2	liver:	n/a	n/a
25	CEBPD	chr1:45956623-45957189	HepG2	liver:	n/a	n/a
26	BACH1	chr1:45956699-45957517	H1-hESC	embryonic stem cell:	n/a	n/a
27	CBX3	chr1:45956728-45957402	K562	blood:	n/a	n/a
28	SP1	chr1:45956645-45957274	K562	blood:	n/a	chr1:45956870-45956879 chr1:45956893-45956907 chr1:45956869-45956879 chr1:45956868-45956880 chr1:45957022-45957043 chr1:45956870-45956879 chr1:45956887-45956899 chr1:45956869-45956879 chr1:45957177-45957187 chr1:45957177-45957186 chr1:45956868-45956880 chr1:45957176-45957188 chr1:45956858-45956872 chr1:45956888-45956898 chr1:45956869-45956878 chr1:45957176-45957188 chr1:45957245-45957266 chr1:45957178-45957187 chr1:45956865-45956879 chr1:45956887-45956899 chr1:45957173-45957187 chr1:45956888-45956898
29	RFX5	chr1:45956725-45957376	Hela-S3	cervix:	n/a	chr1:45957024-45957033
30	USF1	chr1:45956560-45957473	HCT-116	colon:	n/a	n/a
31	ZNF143	chr1:45956708-45957315	GM12878	blood:	n/a	chr1:45956845-45956863
32	MAFK	chr1:45956768-45957555	HepG2	liver:	n/a	chr1:45957294-45957309
33	NFYB	chr1:45956745-45957307	K562	blood:	n/a	chr1:45957061-45957076
34	SIN3A	chr1:45955812-45957435	H1-hESC	embryonic stem cell:	n/a	chr1:45956459-45956470
35	FOXP2	chr1:45956636-45957265	SK-N-MC	brain:	n/a	n/a
36	TEAD4	chr1:45956856-45957203	H1-hESC	embryonic stem cell:	n/a	n/a
37	SP1	chr1:45956533-45957515	H1-hESC	embryonic stem cell:	n/a	chr1:45956870-45956879 chr1:45956893-45956907 chr1:45956869-45956879 chr1:45956868-45956880 chr1:45957022-45957043 chr1:45956870-45956879 chr1:45956887-45956899 chr1:45956869-45956879 chr1:45957177-45957187 chr1:45957177-45957186 chr1:45956868-45956880 chr1:45957176-45957188 chr1:45956858-45956872 chr1:45956888-45956898 chr1:45956869-45956878 chr1:45957176-45957188 chr1:45957245-45957266 chr1:45957178-45957187 chr1:45956865-45956879 chr1:45956887-45956899 chr1:45957173-45957187 chr1:45956888-45956898
38	POLR2A	chr1:45956603-45957051	HUVEC	blood vessel:	n/a	n/a
39	EGR1	chr1:45956668-45957108	MCF-7	breast:	n/a	chr1:45956864-45956877
40	E2F6	chr1:45956548-45957400	H1-hESC	embryonic stem cell:	n/a	chr1:45956869-45956878
41	SIN3AK20	chr1:45955866-45957542	MCF-7	breast:	n/a	n/a
42	CEBPB	chr1:45956718-45957209	K562	blood:	n/a	chr1:45956959-45956970 chr1:45957024-45957032 chr1:45956961-45956972 chr1:45956961-45956972
43	USF1	chr1:45956655-45957194	H1-hESC	embryonic stem cell:	n/a	n/a
44	NFIC	chr1:45956790-45957295	GM12878	blood:	n/a	n/a
45	EP300	chr1:45956753-45957173	SK-N-SH_RA	brain:	n/a	n/a
46	SP4	chr1:45956620-45957397	H1-hESC	embryonic stem cell:	n/a	chr1:45956864-45956880 chr1:45956887-45956903 chr1:45956885-45956901 chr1:45956866-45956882
47	FOXA2	chr1:45956825-45957340	HepG2	liver:	n/a	n/a
48	USF2	chr1:45956797-45957236	H1-hESC	embryonic stem cell:	n/a	chr1:45956982-45956993
49	NRF1	chr1:45956383-45957411	GM12878	blood:	n/a	chr1:45956465-45956474 chr1:45956869-45956878
50	CHD2	chr1:45956688-45957351	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:45957014-45957064	SK-N-MC	brain:	n/a
2	chr1:45957014-45957064	ProgFib	skin:	n/a
3	chr1:45957038-45957088	SKMC	muscle:	n/a
4	chr1:45957038-45957088	SAEC	small airway:	n/a
5	chr1:45957014-45957064	HIPEpiC	eye:	n/a
6	chr1:45957038-45957088	PANC-1	pancreas:	n/a
7	chr1:45957014-45957064	HEEpiC	esophagus:	n/a
8	chr1:45957014-45957064	PANC-1	pancreas:	n/a
9	chr1:45957038-45957088	MCF10A-Er-Src	breast:	n/a
10	chr1:45957014-45957064	GM12878	blood:	n/a
11	chr1:45957038-45957088	U87	brain:	n/a
12	chr1:45957014-45957064	ECC-1	luminal epithelium:	n/a
13	chr1:45957038-45957088	BE2_C	brain:	n/a
14	chr1:45957038-45957088	HNPCEpiC	eye:	n/a
15	chr1:45957038-45957088	HRCEpiC	kidney:	n/a
16	chr1:45957014-45957064	PrEC	prostate:	n/a
17	chr1:45957014-45957064	HUVEC	blood vessel:	n/a
18	chr1:45957014-45957064	AG04449	skin:	fetal
19	chr1:45957038-45957088	AG04449	skin:	fetal
20	chr1:45957014-45957064	AG04450	lung:	fetal
21	chr1:45957014-45957064	IMR90	lung:	fetal
22	chr1:45957014-45957064	HCT-116	colon:	n/a
23	chr1:45957038-45957088	SK-N-MC	brain:	n/a
24	chr1:45957038-45957088	ProgFib	skin:	n/a
25	chr1:45957038-45957088	HPAEpiC	pulmonary alveolar:	n/a
26	chr1:45957014-45957064	SAEC	small airway:	n/a
27	chr1:45957038-45957088	LNCaP	prostate:	n/a
28	chr1:45957014-45957064	GM12891	blood:	n/a
29	chr1:45957038-45957088	NT2-D1	testis:	n/a
30	chr1:45957038-45957088	HRE	kidney:	n/a
31	chr1:45957038-45957088	HCT-116	colon:	n/a
32	chr1:45957014-45957064	HEK293	kidney:	embryo
33	chr1:45957014-45957064	HCM	heart:	n/a
34	chr1:45957038-45957088	AG09309	skin:	n/a
35	chr1:45957038-45957088	BJ	skin:	n/a
36	chr1:45957014-45957064	HepG2	liver:	n/a
37	chr1:45957038-45957088	HMEC	breast:	n/a
38	chr1:45957014-45957064	PFSK-1	brain:	n/a
39	chr1:45957014-45957064	HRE	kidney:	n/a
40	chr1:45957014-45957064	LNCaP	prostate:	n/a
41	chr1:45957038-45957088	A549	lung:	n/a
42	chr1:45957038-45957088	AG10803	skin:	n/a
43	chr1:45957038-45957088	SK-N-SH	brain:	n/a
44	chr1:45957038-45957088	H1-hESC	embryonic stem cell:	embryo
45	chr1:45957038-45957088	HUVEC	blood vessel:	n/a
46	chr1:45957014-45957064	HRCEpiC	kidney:	n/a
47	chr1:45957014-45957064	BJ	skin:	n/a
48	chr1:45957014-45957064	AG09319	gingival:	n/a
49	chr1:45957038-45957088	HCM	heart:	n/a
50	chr1:45957038-45957088	NHDF-neo	bronchial:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:45954972..45958180-chr1:45986651..45988959,5	K562	blood:
2	chr1:45284051..45286963-chr1:45955416..45958247,2	MCF-7	breast:
3	chr1:45804942..45806889-chr1:45955165..45957556,2	K562	blood:
4	chr1:45956512..45959436-chr1:45986078..45988665,3	MCF-7	breast:
5	chr1:45956421..45957116-chr19:32896033..32896543,2	HCT-116	colon:
6	chr1:45283791..45286747-chr1:45955379..45957255,3	MCF-7	breast:
7	chr1:45954905..45960579-chr1:45960652..45966878,10	K562	blood:
8	chr1:45804236..45806527-chr1:45955097..45957372,3	MCF-7	breast:

Variant related genes	Relation type
TESK2	TF binding region
TESK2	CpG island
ENSG00000132773	Chromatin interaction
ENSG00000132763	Chromatin interaction
ENSG00000132781	Chromatin interaction
ENSG00000178904	Chromatin interaction
ENSG00000236624	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000267213	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10789463	0.83[CHB][hapmap];0.93[CHD][hapmap];0.83[TSI][hapmap];0.80[ASN][1000 genomes]
rs10789465	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890331	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10890333	0.80[CHD][hapmap]
rs11211109	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11211122	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211129	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211130	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211135	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11211136	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11211157	0.80[CHD][hapmap]
rs11211163	0.80[CHD][hapmap]
rs11580609	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11582118	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12119202	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12133294	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12139364	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes]
rs1250	0.80[CHD][hapmap]
rs12568144	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12729715	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12738318	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.94[ASN][1000 genomes]
rs12743512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1765709	0.85[ASN][1000 genomes]
rs1771551	0.83[CHB][hapmap]
rs2036021	0.88[ASN][1000 genomes]
rs2050376	0.80[CHD][hapmap]
rs2230658	0.80[CHD][hapmap]
rs2253862	0.80[CHD][hapmap]
rs2275085	0.80[CHD][hapmap]
rs2275276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2298018	0.83[CHB][hapmap]
rs2356413	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2356551	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2356553	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2492841	0.89[ASN][1000 genomes]
rs2934856	0.80[EUR][1000 genomes]
rs2934857	0.80[CHD][hapmap]
rs2934859	1.00[CEU][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs2991970	0.83[EUR][1000 genomes]
rs2991972	1.00[CEU][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs2991986	0.80[CHD][hapmap]
rs2993262	0.80[EUR][1000 genomes]
rs3014210	0.80[CHD][hapmap]
rs3014216	0.80[CHD][hapmap]
rs3014218	0.80[CHD][hapmap]
rs3014238	0.80[CHD][hapmap]
rs3014239	0.80[CHD][hapmap]
rs3014242	0.80[CHD][hapmap]
rs35092140	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3811436	0.80[CHD][hapmap]
rs4431884	0.80[CHD][hapmap]
rs4660312	0.80[CHD][hapmap]
rs4660859	0.88[ASN][1000 genomes]
rs4660861	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4660869	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4660876	0.80[EUR][1000 genomes]
rs4660882	0.80[CHD][hapmap]
rs5021934	0.80[CHD][hapmap]
rs512026	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs518365	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs523526	0.80[EUR][1000 genomes]
rs60608374	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs622798	1.00[CEU][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs644915	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6661321	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666720	0.96[CEU][hapmap]
rs667626	0.80[EUR][1000 genomes]
rs71500084	0.87[ASN][1000 genomes]
rs7526571	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7526665	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs781058	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs781226	0.83[CHB][hapmap]
rs781232	0.83[CHB][hapmap]
rs7903	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9147	0.80[EUR][1000 genomes]
rs9429079	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs945180	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs998199	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
4	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
5	nsv829726	chr1:45897581-46103186	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
6	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
7	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
8	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs937291	Hs.396207	cis	multi-tissue	Pritchard
rs937291	GPBP1L1	cis	Whole Blood	GTEx
rs937291	TESK2	cis	cerebellum	SCAN
rs937291	C1orf84	cis	cerebellum	SCAN
rs937291	CCDC163P	cis	Thyroid	GTEx
rs937291	MMACHC	cis	lymphoblastoid	seeQTL
rs937291	CCDC163P	cis	Esophagus Mucosa	GTEx
rs937291	CCDC163P	cis	Stomach	GTEx
rs937291	CCDC163P	cis	Heart Left Ventricle	GTEx
rs937291	IPP	cis	lymphoblastoid	seeQTL
rs937291	CCDC163P	cis	Nerve Tibial	GTEx
rs937291	CCDC163P	cis	Muscle Skeletal	GTEx
rs937291	CCDC163P	cis	Whole Blood	GTEx
rs937291	CCDC163P	cis	Esophagus Muscularis	GTEx
rs937291	CCDC163P	cis	Skin Sun Exposed Lower leg	GTEx
rs937291	CCDC163P	cis	Artery Tibial	GTEx
rs937291	CYP4Z2P	cis	cerebellum	SCAN
rs937291	LOC126661	Cis_1M	lymphoblastoid	RTeQTL
rs937291	IPP	Cis_1M	lymphoblastoid	RTeQTL
rs937291	TESK2	cis	lymphoblastoid	seeQTL
rs937291	AKR1A1	cis	multi-tissue	Pritchard
rs937291	CCDC163P	cis	Artery Aorta	GTEx
rs937291	CCDC163P	cis	lung	GTEx
rs937291	CCDC163P	cis	Adipose Subcutaneous	GTEx
rs937291	MUTYH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45955000-45957400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr1:45955000-45957600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:45955200-45957400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr1:45955200-45957400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:45955200-45957400	Active TSS	Brain Cingulate Gyrus	brain
6	chr1:45955200-45957600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:45955200-45957600	Active TSS	Colonic Mucosa	Colon
8	chr1:45955400-45957200	Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr1:45955400-45957200	Active TSS	Brain Angular Gyrus	brain
10	chr1:45955400-45957200	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr1:45955400-45957400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:45955400-45957600	Active TSS	Fetal Intestine Large	intestine
13	chr1:45955400-45957600	Active TSS	Fetal Kidney	kidney
14	chr1:45955400-45957600	Active TSS	Ovary	ovary
15	chr1:45955600-45957200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:45955600-45957200	Active TSS	Placenta	Placenta
17	chr1:45955600-45957400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr1:45955600-45957400	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr1:45955600-45957600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:45955600-45957600	Active TSS	Colon Smooth Muscle	Colon
21	chr1:45955600-45957600	Active TSS	Right Atrium	heart
22	chr1:45955600-45957600	Active TSS	Right Ventricle	heart
23	chr1:45955800-45957200	Active TSS	Esophagus	oesophagus
24	chr1:45955800-45957200	Active TSS	Lung	lung
25	chr1:45955800-45957400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:45955800-45957400	Active TSS	Aorta	Aorta
27	chr1:45955800-45957400	Active TSS	Fetal Intestine Small	intestine
28	chr1:45955800-45957400	Active TSS	Left Ventricle	heart
29	chr1:45955800-45957400	Active TSS	GM12878-XiMat	blood
30	chr1:45955800-45957400	Active TSS	HMEC	breast
31	chr1:45955800-45957400	Active TSS	NHEK	skin
32	chr1:45955800-45957600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:45955800-45957600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:45955800-45957600	Active TSS	Duodenum Mucosa	Duodenum
35	chr1:45955800-45957600	Active TSS	Psoas Muscle	Psoas
36	chr1:45955800-45957800	Active TSS	Brain Substantia Nigra	brain
37	chr1:45955800-45957800	Active TSS	NHDF-Ad	bronchial
38	chr1:45956000-45957200	Active TSS	Primary B cells from peripheral blood	blood
39	chr1:45956000-45957200	Active TSS	Liver	Liver
40	chr1:45956000-45957200	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr1:45956000-45957400	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr1:45956000-45957400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:45956000-45957400	Active TSS	Brain Anterior Caudate	brain
44	chr1:45956000-45957400	Active TSS	Brain Hippocampus Middle	brain
45	chr1:45956000-45957400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr1:45956000-45957400	Active TSS	Fetal Lung	lung
47	chr1:45956000-45957400	Active TSS	Placenta Amnion	Placenta Amnion
48	chr1:45956000-45957400	Active TSS	Thymus	Thymus
49	chr1:45956000-45957400	Active TSS	HSMM	muscle
50	chr1:45956000-45957400	Active TSS	HSMMtube	muscle

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