Variant report

Variant	rs5021934
Chromosome Location	chr1:46109304-46109305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:46108565..46111210-chr1:46111840..46113392,2	K562	blood:
2	chr1:46107424..46109631-chr1:46596488..46599289,2	K562	blood:
3	chr1:46108295..46110587-chr1:46677470..46679622,2	K562	blood:
4	chr1:46093617..46096738-chr1:46106740..46110153,3	K562	blood:
5	chr1:46106035..46109902-chr1:46113481..46116474,3	K562	blood:
6	chr1:46093617..46096314-chr1:46107708..46110153,2	K562	blood:
7	chr1:46108099..46111067-chr1:46151308..46153107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117461	Chromatin interaction
ENSG00000159596	Chromatin interaction
ENSG00000225447	Chromatin interaction
ENSG00000159592	Chromatin interaction

Extended variants
information (count: 207 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs10157795	0.87[ASN][1000 genomes]
rs10430105	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs10430123	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10430124	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10749856	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10789465	0.80[CHD][hapmap]
rs10789467	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10789468	0.96[ASN][1000 genomes]
rs10789470	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10789471	0.92[CHD][hapmap]
rs1084086	0.90[CHD][hapmap]
rs10890333	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10890334	0.82[CHB][hapmap]
rs10890335	0.83[CHB][hapmap]
rs10890336	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10890337	0.96[ASN][1000 genomes]
rs10890341	0.83[CHB][hapmap]
rs10890343	0.96[ASN][1000 genomes]
rs10890344	0.93[ASN][1000 genomes]
rs10890346	0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10890347	0.82[CHD][hapmap]
rs10890354	0.84[CEU][hapmap]
rs11211129	0.85[CHD][hapmap]
rs11211145	0.92[CHD][hapmap]
rs11211147	0.80[CHB][hapmap]
rs11211149	0.81[CHB][hapmap]
rs11211151	0.97[ASN][1000 genomes]
rs11211152	0.92[CHD][hapmap]
rs11211157	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11211158	0.96[ASN][1000 genomes]
rs11211159	0.96[ASN][1000 genomes]
rs11211161	0.97[CHD][hapmap]
rs11211163	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11211165	0.96[ASN][1000 genomes]
rs11211166	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11211168	0.92[CHD][hapmap]
rs11211169	0.97[CHD][hapmap]
rs11211171	0.92[CHD][hapmap]
rs11211173	0.92[CHD][hapmap]
rs11211174	0.88[ASN][1000 genomes]
rs11211175	0.88[ASN][1000 genomes]
rs11211176	0.90[ASN][1000 genomes]
rs11211177	0.92[CHD][hapmap]
rs11211178	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11211179	0.87[ASN][1000 genomes]
rs11211181	0.82[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11211199	0.83[CEU][hapmap]
rs1135812	0.83[CHB][hapmap]
rs11587650	0.86[EUR][1000 genomes]
rs12022673	0.82[ASN][1000 genomes]
rs12024590	0.92[CHD][hapmap]
rs12025621	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12031182	0.88[ASN][1000 genomes]
rs12037459	0.89[CHB][hapmap]
rs12037803	0.96[ASN][1000 genomes]
rs12043945	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12045096	0.97[ASN][1000 genomes]
rs12049027	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12069121	0.83[ASN][1000 genomes]
rs12091503	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12404197	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1250	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12564201	0.88[ASN][1000 genomes]
rs12743512	0.80[CHD][hapmap]
rs1541131	0.93[ASN][1000 genomes]
rs1547924	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1547925	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs1972410	0.92[CHD][hapmap]
rs2050376	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2088102	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs2152078	0.92[CHD][hapmap]
rs2230657	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2230658	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2230659	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2253862	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs2275085	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2275086	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs2275276	0.80[CHD][hapmap]
rs28361459	0.91[ASN][1000 genomes]
rs28370457	0.92[CHD][hapmap]
rs28375469	0.97[CHD][hapmap]
rs28378621	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28406914	0.88[ASN][1000 genomes]
rs28432365	0.88[ASN][1000 genomes]
rs28438704	0.93[ASN][1000 genomes]
rs28442079	0.93[ASN][1000 genomes]
rs28456069	0.81[ASN][1000 genomes]
rs28474773	0.88[ASN][1000 genomes]
rs28490344	0.88[ASN][1000 genomes]
rs28495425	0.88[ASN][1000 genomes]
rs28498557	0.86[ASN][1000 genomes]
rs28501477	0.88[ASN][1000 genomes]
rs28528139	0.90[ASN][1000 genomes]
rs28550303	0.97[CHD][hapmap]
rs28564319	0.88[ASN][1000 genomes]
rs28617418	0.82[ASN][1000 genomes]
rs28635845	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28641748	0.88[ASN][1000 genomes]
rs28647556	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28683093	0.83[ASN][1000 genomes]
rs28719889	0.92[CHD][hapmap]
rs28789495	0.88[ASN][1000 genomes]
rs28817701	0.81[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs28844317	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28890893	0.92[CHD][hapmap]
rs2934857	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs2934859	0.82[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs2991972	0.82[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs2991975	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs2991977	0.84[ASN][1000 genomes]
rs2991979	0.92[CHD][hapmap]
rs2991981	0.84[ASN][1000 genomes]
rs2991985	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2991986	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2991987	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2991988	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs2991989	0.82[CHB][hapmap]
rs2993263	0.82[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap]
rs3013594	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3013595	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3013596	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3013597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3014210	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs3014212	0.84[ASN][1000 genomes]
rs3014216	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs3014218	0.88[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs3014235	0.83[CHB][hapmap]
rs3014236	0.93[ASN][1000 genomes]
rs3014237	0.92[CHD][hapmap]
rs3014238	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3014239	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3014241	0.92[CHD][hapmap]
rs3014242	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs3014243	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3014245	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs3014247	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3014251	0.90[ASN][1000 genomes]
rs34895634	0.87[ASN][1000 genomes]
rs3811435	0.96[ASN][1000 genomes]
rs3811436	0.83[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs3935296	0.88[ASN][1000 genomes]
rs4274104	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4330955	0.87[ASN][1000 genomes]
rs4353138	0.92[EUR][1000 genomes]
rs4376778	0.84[CEU][hapmap]
rs4391704	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs4423054	0.88[ASN][1000 genomes]
rs4431884	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4439382	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs4468203	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559551	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4564187	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4607935	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs4609469	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4626927	0.88[ASW][hapmap];0.92[CEU][hapmap];0.82[CHD][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap]
rs4660312	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660313	0.92[CHD][hapmap]
rs4660314	0.87[ASN][1000 genomes]
rs4660879	0.91[ASN][1000 genomes]
rs4660880	0.92[CHD][hapmap]
rs4660882	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4660883	0.82[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4660885	0.88[CEU][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs512026	0.90[JPT][hapmap]
rs518216	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap]
rs518365	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs56177313	0.87[ASN][1000 genomes]
rs56255771	0.87[ASN][1000 genomes]
rs59916372	0.87[ASN][1000 genomes]
rs61784796	0.94[ASN][1000 genomes]
rs61784800	0.90[ASN][1000 genomes]
rs61784803	0.88[ASN][1000 genomes]
rs61784824	0.81[ASN][1000 genomes]
rs61784833	0.86[ASN][1000 genomes]
rs622798	0.82[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap]
rs6429574	0.96[ASN][1000 genomes]
rs6429575	0.96[ASN][1000 genomes]
rs6429576	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6656279	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6658700	0.83[CHB][hapmap];0.97[CHD][hapmap]
rs6665808	0.94[ASN][1000 genomes]
rs6671802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6680380	0.84[CEU][hapmap]
rs6686944	0.92[ASN][1000 genomes]
rs6690926	0.96[ASN][1000 genomes]
rs6694340	0.80[CEU][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs6694889	0.82[CHB][hapmap]
rs6697821	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6699418	0.94[ASN][1000 genomes]
rs6703960	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72688483	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7519900	0.87[ASN][1000 genomes]
rs7520123	0.87[ASN][1000 genomes]
rs7524495	0.94[ASW][hapmap];0.84[CEU][hapmap];0.82[CHD][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap]
rs7540578	0.82[CHD][hapmap]
rs7545118	0.82[ASN][1000 genomes]
rs7547414	0.83[ASN][1000 genomes]
rs8179296	0.96[ASN][1000 genomes]
rs8179402	0.96[ASN][1000 genomes]
rs937291	0.80[CHD][hapmap]
rs9793568	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
2	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
4	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
5	nsv1011587	chr1:46051672-46244492	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
6	nsv1014128	chr1:46097670-46394540	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs5021934	CCDC24	cis	cerebellum	SCAN
rs5021934	CCDC163P	cis	lung	GTEx
rs5021934	CCDC163P	cis	Esophagus Mucosa	GTEx
rs5021934	CYP4Z2P	cis	parietal	SCAN
rs5021934	TESK2	cis	cerebellum	SCAN
rs5021934	CYP4Z2P	cis	cerebellum	SCAN
rs5021934	BEND5	cis	cerebellum	SCAN
rs5021934	IPP	cis	lymphoblastoid	seeQTL
rs5021934	CCDC163P	cis	Artery Tibial	GTEx
rs5021934	CCDC163P	cis	Adipose Subcutaneous	GTEx
rs5021934	GPBP1L1	cis	Lymphoblastoid	GTEx
rs5021934	CCDC163P	cis	Stomach	GTEx
rs5021934	CCDC163P	cis	Muscle Skeletal	GTEx
rs5021934	CCDC163P	cis	Heart Left Ventricle	GTEx
rs5021934	AKR1A1	cis	multi-tissue	Pritchard
rs5021934	CCDC163P	cis	Esophagus Muscularis	GTEx
rs5021934	CCDC163P	cis	Thyroid	GTEx
rs5021934	Hs.396207	cis	multi-tissue	Pritchard
rs5021934	MAST2	cis	Artery Aorta	GTEx
rs5021934	GPBP1L1	cis	Whole Blood	GTEx
rs5021934	SNORD38A	cis	cerebellum	SCAN
rs5021934	UROD	cis	multi-tissue	Pritchard
rs5021934	NSUN4	cis	cerebellum	SCAN
rs5021934	CCDC163P	cis	Nerve Tibial	GTEx
rs5021934	CCDC163P	cis	Whole Blood	GTEx
rs5021934	MAST2	cis	Artery Tibial	GTEx
rs5021934	CCDC163P	cis	Skin Sun Exposed Lower leg	GTEx
rs5021934	IPP	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46053200-46127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:46077800-46112600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:46079800-46109800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:46087600-46129200	Strong transcription	Fetal Thymus	thymus
5	chr1:46088200-46110000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:46088600-46127400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:46088800-46113400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:46089000-46109400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:46089000-46109400	Strong transcription	Liver	Liver
10	chr1:46089000-46109600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr1:46089200-46109800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:46089200-46110000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:46089600-46126400	Strong transcription	Primary T cells from cord blood	blood
14	chr1:46089800-46127000	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:46090200-46109800	Strong transcription	Fetal Muscle Leg	muscle
16	chr1:46091000-46126400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr1:46091200-46109800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr1:46091200-46120400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:46091200-46120800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:46091200-46127000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:46091200-46127000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:46091200-46127200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:46091200-46128200	Strong transcription	Dnd41	blood
24	chr1:46091400-46109400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:46091400-46109800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:46091400-46127000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:46091400-46127000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:46091400-46127000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr1:46092400-46112000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:46092600-46109400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:46092800-46110000	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr1:46092800-46120200	Strong transcription	HSMM	muscle
33	chr1:46093200-46127000	Strong transcription	K562	blood
34	chr1:46093400-46109600	Strong transcription	Fetal Brain Female	brain
35	chr1:46093600-46110000	Strong transcription	Primary B cells from cord blood	blood
36	chr1:46093600-46110000	Strong transcription	GM12878-XiMat	blood
37	chr1:46094800-46109400	Strong transcription	Fetal Kidney	kidney
38	chr1:46095400-46110000	Strong transcription	Adipose Nuclei	Adipose
39	chr1:46095600-46110200	Strong transcription	Primary hematopoietic stem cells	blood
40	chr1:46096200-46110000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr1:46096600-46113200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:46097200-46126800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr1:46098400-46133400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:46099400-46115800	Weak transcription	Fetal Brain Male	brain
45	chr1:46100200-46113000	Weak transcription	Fetal Heart	heart
46	chr1:46100200-46135600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:46101400-46109400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:46102000-46109400	Strong transcription	HepG2	liver
49	chr1:46102200-46110000	Strong transcription	Fetal Lung	lung
50	chr1:46102600-46110000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links