The 2.0 version of rSNPBase

Variant report

Variant rs61784800
Chromosome Location chr1:46178112-46178113
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46154600-46180000 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:46154600-46188600 Weak transcription Fetal Heart heart
3 chr1:46154600-46206600 Weak transcription Brain Substantia Nigra brain
4 chr1:46154800-46186000 Weak transcription Psoas Muscle Psoas
5 chr1:46154800-46192600 Weak transcription Pancreas Pancrea
6 chr1:46155000-46185200 Weak transcription Colonic Mucosa Colon
7 chr1:46155000-46187000 Weak transcription NHLF lung
8 chr1:46155000-46215800 Weak transcription Small Intestine intestine
9 chr1:46155200-46178800 Weak transcription Stomach Mucosa stomach
10 chr1:46155600-46204600 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:46155800-46188400 Weak transcription Hela-S3 cervix
12 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr1:46156800-46203800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
15 chr1:46159800-46186800 Weak transcription HSMMtube muscle
16 chr1:46159800-46188000 Weak transcription Right Ventricle heart
17 chr1:46159800-46194800 Weak transcription Brain Inferior Temporal Lobe brain
18 chr1:46160400-46180000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr1:46160400-46186800 Weak transcription NH-A brain
20 chr1:46160600-46188600 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr1:46160800-46178400 Weak transcription HUVEC blood vessel
22 chr1:46160800-46179000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
24 chr1:46161000-46196200 Weak transcription NHEK skin
25 chr1:46161200-46192800 Weak transcription Spleen Spleen
26 chr1:46161200-46196000 Weak transcription GM12878-XiMat blood
27 chr1:46161200-46206600 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr1:46161400-46192000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:46162200-46192600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr1:46162600-46186600 Weak transcription NHDF-Ad bronchial
31 chr1:46162600-46191400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr1:46163000-46179600 Weak transcription Fetal Brain Female brain
33 chr1:46163000-46186800 Weak transcription HSMM muscle
34 chr1:46163600-46186200 Weak transcription Brain Anterior Caudate brain
35 chr1:46163600-46196200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:46163600-46197400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr1:46165600-46207000 Weak transcription Colon Smooth Muscle Colon
39 chr1:46165800-46188400 Weak transcription K562 blood
40 chr1:46166800-46179800 Weak transcription Primary B cells from cord blood blood
41 chr1:46171200-46185800 Weak transcription HepG2 liver
42 chr1:46172000-46178800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:46172000-46179800 Weak transcription Osteobl bone
44 chr1:46174400-46179000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr1:46174600-46178600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:46174600-46192600 Weak transcription Thymus Thymus
47 chr1:46174600-46192800 Weak transcription Placenta Amnion Placenta Amnion
48 chr1:46174600-46206400 Weak transcription Brain Germinal Matrix brain
49 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
50 chr1:46174600-46215600 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015