The 2.0 version of rSNPBase

Variant report

Variant rs28568986
Chromosome Location chr1:46207743-46207744
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46155000-46215800 Weak transcription Small Intestine intestine
2 chr1:46155800-46215600 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:46157400-46209800 Weak transcription Brain Cingulate Gyrus brain
4 chr1:46160800-46215400 Weak transcription Brain Hippocampus Middle brain
5 chr1:46163600-46215600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr1:46174600-46215600 Weak transcription Brain Angular Gyrus brain
7 chr1:46174600-46215600 Weak transcription Esophagus oesophagus
8 chr1:46177800-46215600 Weak transcription Gastric stomach
9 chr1:46178000-46209200 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:46178000-46209800 Weak transcription Fetal Brain Male brain
11 chr1:46178000-46209800 Weak transcription Lung lung
12 chr1:46178000-46215600 Weak transcription Aorta Aorta
13 chr1:46179600-46209000 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:46180400-46215600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:46181800-46215600 Weak transcription Fetal Brain Female brain
16 chr1:46182200-46215600 Weak transcription Left Ventricle heart
17 chr1:46189200-46214800 Weak transcription NHDF-Ad bronchial
18 chr1:46189400-46215400 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:46193000-46209200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr1:46193400-46208000 Weak transcription Thymus Thymus
21 chr1:46193600-46207800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:46193600-46215400 Weak transcription Rectal Smooth Muscle rectum
23 chr1:46193600-46215400 Weak transcription HSMMtube muscle
24 chr1:46194000-46208400 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr1:46194000-46214200 Weak transcription Pancreas Pancrea
26 chr1:46194000-46214800 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:46194600-46207800 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:46194600-46208200 Weak transcription Fetal Stomach stomach
29 chr1:46194600-46209200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr1:46194600-46209200 Weak transcription Ovary ovary
31 chr1:46196800-46215400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:46196800-46215600 Weak transcription NHEK skin
33 chr1:46197000-46214800 Weak transcription GM12878-XiMat blood
34 chr1:46198000-46214200 Weak transcription Right Ventricle heart
35 chr1:46198000-46215600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:46201400-46209000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:46203400-46215600 Weak transcription Spleen Spleen
38 chr1:46203600-46214800 Weak transcription NH-A brain
39 chr1:46204200-46215600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:46204800-46209200 Weak transcription Colonic Mucosa Colon
41 chr1:46204800-46214800 Weak transcription Psoas Muscle Psoas
42 chr1:46205200-46208200 Weak transcription Fetal Intestine Small intestine
43 chr1:46205200-46212400 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr1:46205200-46214800 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr1:46205200-46215400 Weak transcription Primary neutrophils fromperipheralblood blood
46 chr1:46205200-46215400 Weak transcription HepG2 liver
47 chr1:46205400-46215400 Weak transcription A549 lung
48 chr1:46205400-46215600 Weak transcription Stomach Mucosa stomach
49 chr1:46205400-46215600 Weak transcription NHLF lung
50 chr1:46206200-46211000 Strong transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015