Variant report

Variant	rs6697821
Chromosome Location	chr1:46216722-46216723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:46215656-46216854	HEK293	kidney:	n/a	chr1:46216166-46216174
2	MAX	chr1:46215647-46216930	A549	lung:	n/a	chr1:46216339-46216349
3	MAZ	chr1:46215715-46216789	GM12878	blood:	n/a	chr1:46216339-46216349
4	REST	chr1:46215465-46217000	H1-neurons	neurons:	n/a	n/a
5	STAT5A	chr1:46215527-46216824	GM12878	blood:	n/a	chr1:46216373-46216384 chr1:46216786-46216798
6	HEY1	chr1:46215605-46216868	K562	blood:	n/a	n/a
7	RELA	chr1:46215835-46216813	GM10847	blood:	n/a	n/a
8	MAX	chr1:46215775-46216728	K562	blood:	n/a	chr1:46216339-46216349
9	POLR2A	chr1:46215888-46216776	GM12878	blood:	n/a	n/a
10	CCNT2	chr1:46216037-46216726	K562	blood:	n/a	n/a
11	POLR2A	chr1:46215670-46216947	MCF10A-Er-Src	breast:	n/a	n/a
12	CHD1	chr1:46215991-46216725	H1-hESC	embryonic stem cell:	n/a	n/a
13	NFIC	chr1:46215922-46216751	HepG2	liver:	n/a	chr1:46216636-46216664
14	POLR2A	chr1:46215649-46216832	GM19193	blood:	n/a	n/a
15	POLR2A	chr1:46215650-46216929	SK-N-MC	brain:	n/a	n/a
16	PAX5	chr1:46215843-46216735	GM12878	blood:	n/a	chr1:46216468-46216477
17	STAT5A	chr1:46215690-46216780	K562	blood:	n/a	chr1:46216373-46216384
18	CTCF	chr1:46216620-46216770	GM12866	blood:	n/a	n/a
19	RCOR1	chr1:46215847-46216754	K562	blood:	n/a	n/a
20	SP1	chr1:46216304-46216813	H1-hESC	embryonic stem cell:	n/a	chr1:46216338-46216350 chr1:46216335-46216349 chr1:46216339-46216348
21	MYC	chr1:46215715-46216758	K562	blood:	n/a	chr1:46216339-46216349
22	MAX	chr1:46215735-46216826	SK-N-SH	brain:	n/a	chr1:46216339-46216349
23	CHD2	chr1:46215832-46216798	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr1:46215792-46216805	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr1:46215982-46216798	SK-N-MC	brain:	n/a	n/a
26	HEY1	chr1:46215812-46216799	HepG2	liver:	n/a	n/a
27	POLR2A	chr1:46215722-46216756	K562	blood:	n/a	n/a
28	YY1	chr1:46216043-46216751	GM12878	blood:	n/a	chr1:46216050-46216061
29	HA-E2F1	chr1:46215789-46216882	MCF-7	breast:	n/a	chr1:46216468-46216477
30	POLR2A	chr1:46215841-46216785	K562	blood:	n/a	n/a
31	RUNX3	chr1:46215826-46216818	GM12878	blood:	n/a	n/a
32	POLR2A	chr1:46215910-46216798	A549	lung:	n/a	n/a
33	MYBL2	chr1:46216121-46216983	HepG2	liver:	n/a	n/a
34	POLR2A	chr1:46215636-46216841	GM18505	blood:	n/a	n/a
35	TAF1	chr1:46215768-46216812	K562	blood:	n/a	n/a
36	YY1	chr1:46215790-46216737	K562	blood:	n/a	chr1:46216050-46216061
37	HCFC1	chr1:46215600-46216902	Hela-S3	cervix:	n/a	n/a
38	NRF1	chr1:46216120-46216807	H1-hESC	embryonic stem cell:	n/a	chr1:46216467-46216478 chr1:46216289-46216298 chr1:46216467-46216481 chr1:46216629-46216636 chr1:46216469-46216478 chr1:46216464-46216478 chr1:46216467-46216478
39	TCF3	chr1:46216064-46216766	GM12878	blood:	n/a	n/a
40	POLR2A	chr1:46215775-46216842	GM12878	blood:	n/a	n/a
41	POLR2A	chr1:46215710-46216817	NB4	blood:	n/a	n/a
42	FOSL2	chr1:46216017-46216769	HepG2	liver:	n/a	n/a
43	POLR2A	chr1:46215503-46216856	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr1:46215878-46216847	PFSK-1	brain:	n/a	n/a
45	HEY1	chr1:46215536-46216903	K562	blood:	n/a	n/a
46	YY1	chr1:46215737-46216773	GM12892	blood:	n/a	chr1:46216050-46216061
47	POLR2A	chr1:46215658-46216865	HL-60	blood:	n/a	n/a
48	POLR2A	chr1:46215763-46216896	H1-neurons	neurons:	n/a	n/a
49	TEAD4	chr1:46216368-46216800	H1-hESC	embryonic stem cell:	n/a	n/a
50	PML	chr1:46215504-46216966	GM12878	blood:	n/a	chr1:46216166-46216174

No.	Distal block	Cell Line	Cell type
1	chr1:46149977..46154848-chr1:46211592..46220262,26	K562	blood:
2	chr1:46153059..46154039-chr1:46216203..46216739,2	MCF-7	breast:
3	chr1:46151257..46156483-chr1:46213184..46217414,6	MCF-7	breast:
4	chr1:45985980..45988948-chr1:46213742..46217743,4	K562	blood:
5	chr1:46216677..46220436-chr1:46232703..46236378,4	K562	blood:
6	chr1:46216128..46216886-chr11:62432686..62433305,2	Hela-S3	cervix:
7	chr1:46149445..46155578-chr1:46213291..46217457,7	MCF-7	breast:
8	chr1:46213556..46220443-chr1:46266629..46271737,8	K562	blood:
9	chr1:46216147..46217963-chr1:46486997..46489050,2	MCF-7	breast:
10	chr1:46150194..46156123-chr1:46211510..46222859,25	K562	blood:
11	chr1:46216513..46217350-chr19:17356305..17357058,2	Hela-S3	cervix:
12	chr1:46215876..46219394-chr1:46266629..46270801,6	K562	blood:
13	chr1:46049275..46051699-chr1:46215070..46217798,3	K562	blood:
14	chr1:19577972..19578844-chr1:46216129..46216783,2	NB4	blood:
15	chr1:46216570..46222815-chr1:46224414..46229889,7	K562	blood:
16	chr1:46211582..46213293-chr1:46216678..46219405,2	MCF-7	breast:
17	chr1:46216194..46217059-chr17:47754911..47755582,2	NB4	blood:
18	chr1:46215984..46216935-chr11:33757514..33758077,2	Hela-S3	cervix:
19	chr1:46216566..46218068-chr1:46223422..46225042,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAST2-3	chr1:46216682-46216920	NONHSAT002970

Variant related genes	Relation type
IPP	TF binding region
ENSG00000132780	Chromatin interaction
ENSG00000160113	Chromatin interaction
ENSG00000206597	Chromatin interaction
ENSG00000214756	Chromatin interaction
ENSG00000086015	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000121067	Chromatin interaction
ENSG00000085063	Chromatin interaction
ENSG00000159592	Chromatin interaction
ENSG00000159596	Chromatin interaction
ENSG00000053372	Chromatin interaction
ENSG00000127463	Chromatin interaction

Extended variants
information (count: 301 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:273)

rs_ID	r²[population]
rs10157795	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10430105	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10430123	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10430124	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10749856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10789467	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789468	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10789470	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10789471	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789474	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10789485	0.92[ASW][hapmap];0.89[TSI][hapmap]
rs10789486	0.89[TSI][hapmap]
rs1084086	0.86[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap]
rs10890333	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890334	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10890335	0.96[CEU][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10890336	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10890337	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10890340	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10890341	0.95[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10890342	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10890343	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890344	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10890345	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10890346	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10890347	0.83[ASW][hapmap];0.84[CEU][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10890348	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10890361	0.82[CHD][hapmap]
rs10890363	0.82[CHD][hapmap]
rs10890365	0.89[TSI][hapmap]
rs10890370	0.89[TSI][hapmap]
rs10890373	0.83[ASW][hapmap];0.89[TSI][hapmap]
rs10890378	0.89[TSI][hapmap]
rs11211145	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211146	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211147	0.95[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211149	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211151	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11211152	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211157	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11211158	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11211159	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211160	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs11211161	0.93[ASW][hapmap];1.00[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11211162	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11211163	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211165	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211166	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11211168	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11211169	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11211170	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11211171	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211173	0.86[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11211174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11211175	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11211176	0.95[ASN][1000 genomes]
rs11211177	0.83[ASW][hapmap];0.96[CEU][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11211178	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211179	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211182	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11211200	0.89[TSI][hapmap]
rs11211204	0.89[TSI][hapmap]
rs11211232	0.83[ASW][hapmap];0.89[TSI][hapmap]
rs1135812	0.96[CEU][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1135850	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11488313	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12022141	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12022673	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12023439	0.96[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12024590	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12025613	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12025621	0.94[ASN][1000 genomes]
rs12027622	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12031182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12037459	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12037803	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12041197	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12041677	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12043945	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12045096	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12045451	0.82[AMR][1000 genomes]
rs12047629	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12048866	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12049027	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12062535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12069121	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12070775	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12076580	0.92[ASW][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes]
rs12081175	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12091503	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12097761	0.81[AMR][1000 genomes]
rs12133129	0.89[TSI][hapmap]
rs12402590	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12404197	0.90[ASN][1000 genomes]
rs1250	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12564201	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541131	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1547924	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1547925	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1972410	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2050376	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2088102	0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs2152078	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap]
rs2230657	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2230658	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2230659	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[ASN][1000 genomes]
rs2253862	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs2275085	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2275086	0.93[ASW][hapmap];0.92[CEU][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs28361459	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28370457	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28375469	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28376548	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28378621	0.96[ASN][1000 genomes]
rs28396194	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28406914	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28432365	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28438704	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28441217	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28442079	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28456069	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28474773	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28490344	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28495425	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28498557	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28501477	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28507722	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28508523	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28513660	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28528139	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28545085	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28550303	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28564319	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28568986	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28594599	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28597977	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28607263	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28617418	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28623463	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28635845	0.91[ASN][1000 genomes]
rs28641748	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28647556	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28683093	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28719889	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28752166	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28789495	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28812624	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28817701	0.93[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28844317	0.96[ASN][1000 genomes]
rs28862324	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28890893	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2934857	0.87[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs2934859	0.92[CHD][hapmap];0.95[JPT][hapmap]
rs2991975	0.83[JPT][hapmap]
rs2991979	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap]
rs2991983	0.81[AMR][1000 genomes]
rs2991985	0.82[ASN][1000 genomes]
rs2991986	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2991987	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2991988	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs2991989	0.92[CEU][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2993263	0.92[CHD][hapmap];0.95[JPT][hapmap]
rs3013594	0.83[ASN][1000 genomes]
rs3013595	0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3013596	0.89[ASN][1000 genomes]
rs3013597	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3014210	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap]
rs3014216	0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs3014218	1.00[CHD][hapmap];0.90[JPT][hapmap]
rs3014235	0.92[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs3014236	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3014237	1.00[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes]
rs3014238	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3014239	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3014240	0.82[AMR][1000 genomes]
rs3014241	1.00[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap]
rs3014242	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap]
rs3014243	0.92[ASN][1000 genomes]
rs3014245	1.00[ASW][hapmap];0.92[CEU][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes]
rs3014246	0.82[AMR][1000 genomes]
rs3014247	0.86[ASN][1000 genomes]
rs3014249	0.81[AMR][1000 genomes]
rs3014251	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34895634	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3811435	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3811436	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3935296	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4274104	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4275489	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4298677	0.89[TSI][hapmap]
rs4330955	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4390216	0.89[TSI][hapmap]
rs4391704	0.84[JPT][hapmap]
rs4415615	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4423054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4431884	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4439382	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4468203	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4508055	0.88[AMR][1000 genomes]
rs4545281	0.82[CHD][hapmap]
rs4559551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4564187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4586014	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4607935	0.95[CEU][hapmap];0.80[CHB][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4607936	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4609469	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4626927	0.82[CHD][hapmap]
rs4630155	0.89[AMR][1000 genomes]
rs4660312	0.90[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4660313	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4660314	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4660318	0.89[TSI][hapmap]
rs4660319	0.82[CHD][hapmap]
rs4660879	0.83[ASN][1000 genomes]
rs4660880	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4660882	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4660883	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs499600	0.81[CHB][hapmap];0.84[YRI][hapmap]
rs5021934	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs518216	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.86[MKK][hapmap]
rs56177313	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56255771	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59916372	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61062981	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61784793	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61784795	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61784796	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61784799	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61784800	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61784801	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61784803	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61784821	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61784824	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61784833	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6429574	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6429575	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6429576	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6429580	0.89[TSI][hapmap]
rs6429582	0.82[CHD][hapmap]
rs6656279	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6658700	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6665808	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66682726	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6671802	0.89[ASN][1000 genomes]
rs6672115	0.92[ASW][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]
rs6678444	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6682683	0.89[TSI][hapmap]
rs6683274	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6686944	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6690386	0.91[AMR][1000 genomes]
rs6690775	0.90[AMR][1000 genomes]
rs6690926	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6694889	0.87[CEU][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6699418	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6699444	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6703748	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6703960	0.94[ASN][1000 genomes]
rs71500087	0.84[AMR][1000 genomes]
rs72688483	0.89[ASN][1000 genomes]
rs7519900	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7520123	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524495	0.82[CHD][hapmap]
rs7529699	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7531911	0.89[TSI][hapmap]
rs7539800	0.85[AMR][1000 genomes]
rs7540578	0.83[ASW][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7541962	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7556436	0.82[CHD][hapmap]
rs8179296	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8179402	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9429172	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9793568	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
2	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
4	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
5	nsv1011587	chr1:46051672-46244492	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
6	nsv1014128	chr1:46097670-46394540	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv1010054	chr1:46144479-46320493	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
8	nsv1006861	chr1:46144479-46417621	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
9	nsv1003049	chr1:46144479-46476149	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
10	nsv870511	chr1:46148138-46245423	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
11	nsv871233	chr1:46153203-46311275	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
12	nsv1008219	chr1:46160098-46493958	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
13	nsv534943	chr1:46160098-46493958	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
14	nsv1000498	chr1:46171836-46438252	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
15	nsv870791	chr1:46182916-46398415	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv871023	chr1:46184300-46301182	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
17	nsv998925	chr1:46184925-46353041	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
18	nsv1003986	chr1:46184925-46417621	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
19	nsv1007501	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
20	nsv534944	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
21	nsv871763	chr1:46186576-46236098	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
22	nsv1006891	chr1:46189258-46408032	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
23	nsv1009355	chr1:46189258-46463012	Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
24	nsv870626	chr1:46196813-46314170	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
25	nsv871312	chr1:46196813-46353332	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
26	esv2830426	chr1:46202361-46347367	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
27	nsv546158	chr1:46216575-46495434	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
28	nsv870911	chr1:46216575-46498375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs6697821	IPP	Cis_1M	lymphoblastoid	RTeQTL
rs6697821	CYP4Z2P	cis	cerebellum	SCAN
rs6697821	B4GALT2	cis	cerebellum	SCAN
rs6697821	NSUN4	cis	cerebellum	SCAN
rs6697821	IPP	cis	lymphoblastoid	seeQTL
rs6697821	GPBP1L1	cis	Muscle Skeletal	GTEx
rs6697821	IPP	cis	multi-tissue	Pritchard
rs6697821	RAD54L	cis	parietal	SCAN
rs6697821	MED8	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46214800-46217000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:46214800-46217000	Active TSS	Fetal Kidney	kidney
3	chr1:46215000-46217000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:46215400-46216800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:46215400-46216800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:46215400-46216800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:46215400-46216800	Active TSS	Brain Germinal Matrix	brain
8	chr1:46215400-46217000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:46215400-46217000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:46215400-46217000	Active TSS	Brain Hippocampus Middle	brain
11	chr1:46215400-46217000	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr1:46215400-46217000	Active TSS	Right Ventricle	heart
13	chr1:46215400-46217000	Active TSS	A549	lung
14	chr1:46215400-46217000	Active TSS	HepG2	liver
15	chr1:46215400-46217000	Active TSS	HSMM	muscle
16	chr1:46215400-46217000	Active TSS	HSMMtube	muscle
17	chr1:46215400-46217200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:46215400-46217200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:46215400-46217400	Active TSS	Rectal Smooth Muscle	rectum
20	chr1:46215600-46216800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr1:46215600-46216800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:46215600-46216800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:46215600-46216800	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr1:46215600-46216800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:46215600-46216800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:46215600-46216800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:46215600-46216800	Active TSS	Gastric	stomach
28	chr1:46215600-46216800	Active TSS	Lung	lung
29	chr1:46215600-46216800	Active TSS	Ovary	ovary
30	chr1:46215600-46216800	Active TSS	Pancreas	Pancrea
31	chr1:46215600-46216800	Active TSS	Stomach Mucosa	stomach
32	chr1:46215600-46216800	Active TSS	NHLF	lung
33	chr1:46215600-46217000	Active TSS	H1 Cell Line	embryonic stem cell
34	chr1:46215600-46217000	Active TSS	H9 Cell Line	embryonic stem cell
35	chr1:46215600-46217000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:46215600-46217000	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr1:46215600-46217000	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr1:46215600-46217000	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr1:46215600-46217000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr1:46215600-46217000	Active TSS	Aorta	Aorta
41	chr1:46215600-46217000	Active TSS	Brain Cingulate Gyrus	brain
42	chr1:46215600-46217000	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr1:46215600-46217000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:46215600-46217000	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr1:46215600-46217000	Active TSS	Fetal Lung	lung
46	chr1:46215600-46217000	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr1:46215600-46217000	Active TSS	Thymus	Thymus
48	chr1:46215600-46217000	Active TSS	NHDF-Ad	bronchial
49	chr1:46215600-46217200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr1:46215800-46216800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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