The 2.0 version of rSNPBase

Variant report

Variant rs10890340
Chromosome Location chr1:46133599-46133600
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46100200-46135600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:46106200-46140000 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:46121000-46135400 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:46123400-46134000 Weak transcription Gastric stomach
5 chr1:46124400-46135000 Weak transcription A549 lung
6 chr1:46124800-46144600 Weak transcription Aorta Aorta
7 chr1:46125000-46148400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:46125200-46135000 Weak transcription NH-A brain
9 chr1:46125200-46151000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:46125400-46135800 Weak transcription Fetal Brain Male brain
11 chr1:46125400-46140000 Weak transcription NHEK skin
12 chr1:46125600-46134800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:46126000-46134800 Weak transcription Stomach Smooth Muscle stomach
14 chr1:46126000-46135000 Weak transcription Right Ventricle heart
15 chr1:46126000-46137000 Weak transcription Esophagus oesophagus
16 chr1:46126000-46143000 Weak transcription Fetal Lung lung
17 chr1:46126000-46143800 Weak transcription Fetal Brain Female brain
18 chr1:46126000-46144200 Weak transcription Brain Germinal Matrix brain
19 chr1:46126000-46145000 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:46126000-46147200 Weak transcription Thymus Thymus
21 chr1:46126000-46149000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:46126000-46151000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:46126200-46133600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:46126200-46134400 Weak transcription Muscle Satellite Cultured Cells --
25 chr1:46126200-46138400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr1:46126200-46138800 Weak transcription Brain Hippocampus Middle brain
27 chr1:46126200-46140000 Weak transcription iPS-15b Cell Line embryonic stem cell
28 chr1:46126200-46140200 Weak transcription H9 Cell Line embryonic stem cell
29 chr1:46126200-46144800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr1:46126200-46148600 Weak transcription Fetal Stomach stomach
31 chr1:46126400-46134400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:46126400-46134400 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr1:46126400-46134400 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr1:46126400-46134800 Weak transcription Adipose Nuclei Adipose
35 chr1:46126400-46134800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr1:46126400-46134800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:46126400-46135000 Weak transcription Primary T killer naive cells fromperipheralblood blood
38 chr1:46126400-46135000 Weak transcription Rectal Smooth Muscle rectum
39 chr1:46126400-46137000 Weak transcription Small Intestine intestine
40 chr1:46126400-46139400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:46126400-46140000 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr1:46126400-46143000 Weak transcription Primary T cells from cord blood blood
43 chr1:46126400-46144200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:46126400-46144800 Weak transcription Colonic Mucosa Colon
45 chr1:46126400-46144800 Weak transcription Fetal Muscle Leg muscle
46 chr1:46126400-46146600 Weak transcription Fetal Kidney kidney
47 chr1:46126400-46151000 Weak transcription Fetal Muscle Trunk muscle
48 chr1:46126600-46134400 Weak transcription NHDF-Ad bronchial
49 chr1:46126600-46143000 Weak transcription Fetal Intestine Large intestine
50 chr1:46126600-46144800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015